Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00453 ATGTCGGAAGCACCGTCTCAGCCACCACTCCCCGCCACCGAGACACCTCCTCCTTACTGGTGCTACCACTGCGACAAACACGTCTCCGTTGAAACGGTCGCTAATGTCCCCGACGTCATCTGCGGCGATTGCAAAAACGGTTTCGTCGAATCCATCCCCACACCTTCTCGAACTCGCTCACCGTCTTCTTCCTCCGATGATCCTTACTTTGGTTCGCAATTTCTTCAGGTTCTTCGCCTAATCGCTGAATCGTCGCGTGAAGACGACGTGTCTCCTCCCCCTCCTCCGAGTCGTTCTCCGGAAGAGGATTTTCTTAGGATCGAACTCAGTGGTTGGAACCACAACGAGGAAGATGACGATGATGCGTTTCACACCGACGGTGAAGATGACGAAGGTAGCGTCGAGGAGGTTGAAGATCGACCTGGCAACGAGGATCCGAATATGGACGATGAAGATATGAGACGAAGGAGGCGCGATCTGTTACGGCATCGGATTAGGGATTTGGCGACGCGGACTCGAAGTATGCAGAATCGGATCTTGGATTGGGCGGAGATTTTGATGGGATTGGAAGATAATTCGATTGAATTTCGTCTTCAGGGACCGGAATTGGAGCGGTATGTTGGAAATCCTGAGGATTACGTTGACGCGGCGGATTATGAAGCGTTGCTGCAGACGCTGGCGGAGAGTGATGGAAGTGGGAGGAGAGGAGCTCCGCCGGCGTCAAAGTCTGCTGTGGAAGGTTTACCGACGGTTAAGATTGCGTCGGAGAGTGAAGTGGTTGCTTGTGCTGTGTGTAAGGATATGCTTGGTGTTGGAGACATGGCGAAGAGATTGCCGTGTGGGCATGAGTATCATGGAGATTGCATTGTTCCGTGGTTGAGTAGTAGAAATTCTTGTCCTGTTTGCAGGTTTGAGCTTCCAACAGATGATAAGGAGTATGAAGAAGAGAGAGCTTCGGGATCGGGGCGCGGTGGAGCTTCCGCCGTGTGA 990 0.5253 MSEAPSQPPLPATETPPPYWCYHCDKHVSVETVANVPDVICGDCKNGFVESIPTPSRTRSPSSSSDDPYFGSQFLQVLRLIAESSREDDVSPPPPPSRSPEEDFLRIELSGWNHNEEDDDDAFHTDGEDDEGSVEEVEDRPGNEDPNMDDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIEFRLQGPELERYVGNPEDYVDAADYEALLQTLAESDGSGRRGAPPASKSAVEGLPTVKIASESEVVACAVCKDMLGVGDMAKRLPCGHEYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERASGSGRGGASAV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00453 329 MobiDBLite consensus disorder prediction 114 155 - -
Vivi2g00453 329 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
Vivi2g00453 329 SMART ring_2 262 302 IPR001841 -
Vivi2g00453 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 309 IPR013083 -
Vivi2g00453 329 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
Vivi2g00453 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 136 307 - -
Vivi2g00453 329 SUPERFAMILY RING/U-box 257 309 - -
Vivi2g00453 329 MobiDBLite consensus disorder prediction 121 146 - -
Vivi2g00453 329 MobiDBLite consensus disorder prediction 52 71 - -
Vivi2g00453 329 Pfam Zinc finger, C3HC4 type (RING finger) 262 302 - -
Vivi2g00453 329 FunFam E3 ubiquitin-protein ligase RING1-like 225 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00453 Vivi-Chr2 12332174 12333508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00453 173 315 C3H Transcription Factor Family AT5G01980 48.000 6.25e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00453 - - gmx:100802200 462.996