Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g00453 | ATGTCGGAAGCACCGTCTCAGCCACCACTCCCCGCCACCGAGACACCTCCTCCTTACTGGTGCTACCACTGCGACAAACACGTCTCCGTTGAAACGGTCGCTAATGTCCCCGACGTCATCTGCGGCGATTGCAAAAACGGTTTCGTCGAATCCATCCCCACACCTTCTCGAACTCGCTCACCGTCTTCTTCCTCCGATGATCCTTACTTTGGTTCGCAATTTCTTCAGGTTCTTCGCCTAATCGCTGAATCGTCGCGTGAAGACGACGTGTCTCCTCCCCCTCCTCCGAGTCGTTCTCCGGAAGAGGATTTTCTTAGGATCGAACTCAGTGGTTGGAACCACAACGAGGAAGATGACGATGATGCGTTTCACACCGACGGTGAAGATGACGAAGGTAGCGTCGAGGAGGTTGAAGATCGACCTGGCAACGAGGATCCGAATATGGACGATGAAGATATGAGACGAAGGAGGCGCGATCTGTTACGGCATCGGATTAGGGATTTGGCGACGCGGACTCGAAGTATGCAGAATCGGATCTTGGATTGGGCGGAGATTTTGATGGGATTGGAAGATAATTCGATTGAATTTCGTCTTCAGGGACCGGAATTGGAGCGGTATGTTGGAAATCCTGAGGATTACGTTGACGCGGCGGATTATGAAGCGTTGCTGCAGACGCTGGCGGAGAGTGATGGAAGTGGGAGGAGAGGAGCTCCGCCGGCGTCAAAGTCTGCTGTGGAAGGTTTACCGACGGTTAAGATTGCGTCGGAGAGTGAAGTGGTTGCTTGTGCTGTGTGTAAGGATATGCTTGGTGTTGGAGACATGGCGAAGAGATTGCCGTGTGGGCATGAGTATCATGGAGATTGCATTGTTCCGTGGTTGAGTAGTAGAAATTCTTGTCCTGTTTGCAGGTTTGAGCTTCCAACAGATGATAAGGAGTATGAAGAAGAGAGAGCTTCGGGATCGGGGCGCGGTGGAGCTTCCGCCGTGTGA | 990 | 0.5253 | MSEAPSQPPLPATETPPPYWCYHCDKHVSVETVANVPDVICGDCKNGFVESIPTPSRTRSPSSSSDDPYFGSQFLQVLRLIAESSREDDVSPPPPPSRSPEEDFLRIELSGWNHNEEDDDDAFHTDGEDDEGSVEEVEDRPGNEDPNMDDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIEFRLQGPELERYVGNPEDYVDAADYEALLQTLAESDGSGRRGAPPASKSAVEGLPTVKIASESEVVACAVCKDMLGVGDMAKRLPCGHEYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERASGSGRGGASAV | 329 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g00453 | 329 | MobiDBLite | consensus disorder prediction | 114 | 155 | - | - | |
Vivi2g00453 | 329 | Pfam | zinc-ribbon | 19 | 52 | IPR039525 | GO:0061630 | |
Vivi2g00453 | 329 | SMART | ring_2 | 262 | 302 | IPR001841 | - | |
Vivi2g00453 | 329 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 309 | IPR013083 | - | |
Vivi2g00453 | 329 | ProSiteProfiles | Zinc finger RING-type profile. | 262 | 303 | IPR001841 | - | |
Vivi2g00453 | 329 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 136 | 307 | - | - | |
Vivi2g00453 | 329 | SUPERFAMILY | RING/U-box | 257 | 309 | - | - | |
Vivi2g00453 | 329 | MobiDBLite | consensus disorder prediction | 121 | 146 | - | - | |
Vivi2g00453 | 329 | MobiDBLite | consensus disorder prediction | 52 | 71 | - | - | |
Vivi2g00453 | 329 | Pfam | Zinc finger, C3HC4 type (RING finger) | 262 | 302 | - | - | |
Vivi2g00453 | 329 | FunFam | E3 ubiquitin-protein ligase RING1-like | 225 | 309 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g00453 | Vivi-Chr2 | 12332174 | 12333508 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g00453 | 173 | 315 | C3H Transcription Factor Family | AT5G01980 | 48.000 | 6.25e-36 | 134 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g00453 | - | - | gmx:100802200 | 462.996 |