LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g00437	ATGGCGGAGGAACACAACAACACCACAACCGCACTCACAGAAGATTCCATCCCCGATCATCCAGAAATAACTGAAACACCCGAAACGGTGTCGTTCAAAGTCAATGACGTGGCAAAGGATGCGAATGCTGTATCAGAAACGGCGTCGTTGAAGGAAGCAGAAGAAGGTATGGATATTGTTGCCGAAACGGCGTCGTTGAAGGACGGTTTAGGTTCGGTTGAAGGTGATGACGTGGCAGCTGGAGATTCACCTACCGTCGTAGAGCCGATAAAGAAGTATCACAGAAGGAGGAATAAACCTGGAGGAAAGAGTAATGTAGAAATCGAAGCGTTGAAGAATGAACCAAACGGAGAAGAAACGGTTAAAGCTGATGACGTGGCAGGTGGTGGCTCTGACTCTGTTCCGCCAGAGAAGAAGAAGAAACGCGGCGTAAAGAGGAAGACGGAGAAGGAAGGTGAAGCTGTTGAAGGTGATGATGTGGCGGTGGCGGTTGTAGGTTCGTCTTCTGTTGAGGGGACTGTGAGGAAGAGTGAACGTCCTAGGAAGATTAAATCGTTTGCGGAGGATTTTGTGTCAGTGTTGGATGCGGAAGTGACGAAGAATGGGAATTGTAAAAGGAAGAAGGCGATAATAGATGTTTTTGATGCGAATAATGCTGTACAAGAAGGGGAAGATGTGAAGGAAGAGAAGAAGAAACCTGGTAGAAAAAGGAAGAATGATTTTAGTTCTGAAGAAGATTATAAAGGTGCAGTAGGTGGGGAAAGTGTGAAGAAAGAGAAGAAAAAACCTGGTGGTAGAAGAAAGAAGAATGGTTATAGTTCTGAAGACGAATGCAAACCTGAACTAGATGATGAAAATGTGAAGAAAAAAAATAAGAAACTTGGTAGAAAAAGTAAGAAAGTTTATAGTTCTGGAGAAGAATATAAAGCTGTAGTTGATAGCGAAAATGTAAAGAAAGAAACGGAGAAACCTGGTAGAAAAAGAAGGACAGTTTCTATTTCTGTAGAAAATGGTGAAGCTGCAGAAGAGGGGGAAAACGGTGGTTTTGACAAGGAAGAGAAGAAAACACCTGGTCGAAAAATTAAGATCGAAGATAATGAACTGGTCTCTGAAAAGAAGTCTAAGAGTGTTGTGCTGAAGGATGAGATACAGGACTGTCCTGAAATTGAAACTGAAACGCCCGTGTATATTGATAATAAAGGTTATTCTTTGCGTAAGACTAGAAACACGAAACCTACATTAGTTGAACATGTGGTGCCAAAAATCAACAAGAAAAACCCTAAGCGGATTGAAAAGGAGTCTTTAATGTGCCATCAATGTCAGAGAAATGATAAGGGCAGGGTAGTCAGATGCACTAGCTGCAAAAGGAAAAGATTTTGCATACACTGTATAACTAATTGGTATCCTAACTGGAAAGAGGATGAAATTGCTGAGAAATGTCCGGTGTGCTGTGGTAATTGCAATTGCAAATCATGCCTGCGATCACGTGTTCTTATCAATGCAATTAAAGAAAAGACAGAAACCAACGAAGATCCTGAGGTTGGGCCCTCCAAGTATATGCTAAAAGAACTTCTTCCGTATTTAATACGATTGGATGAGGAACAAATGACCGAGAAGGAGATAGAAGCAAAAAGACAAGGGCTTCCACTATCGGAGCTAAAAATAAAAGTAGCAGAGTACTCTAAAAATGAGCGCGTGTACTGTGATAACTGCAAAACATCAATATTTGACTACCACCGAAGCTGTACAAAATGCTCATTTGACATCTGTCTCCTCTGTTGCTGTGAGCTTCGTGGTGGCAAGCTTCTAGGTGGCGATGATCCAATTGAGTTTGAGTTTATCTTCCGAGGGCGTGAATATCTACATGGCGGAGATGAAAAGAAACAAGATAGAAAAGAAAACCCTCGTTCTGCAGTCCAGCTTGAGATTTGTGAATGGTCTAAATCTGGGTGGCGTGCAGATACTGATGGTAGCATTCCCTGTCCAAAGACCAATAATGATTGTGACCATGGTTTCCTTGAACTGAGAAGCATACTTCAGCCAAATTGCATATCTGAGTTAGTATCCAAAGCAAAAGAACTTGTAGAGGAAGCAATGGAACTTCAAGATGCAGAGGAGAATCTTGATGATAGGTGTTCTTGTTTGAAGCCTGTTAGGAATTCAGATGATATACACAATAACACAAGGAAGGCAGCTTTTCGTGAAGATTCTAGCGACAACTTTTTATATTGTCCTAGGGCTGTAGATCTACGTCAGGAGGATTTAAGACATTTTCAATCACACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATAAGCAACACTAAGCATAAAACACTTTTGGATGTGAAGGCAATTGATTGCTTGGATTGGTGTGAGGGAGATATTAATGTGCACCAATTCTTTACTGGGTACACAGAGGGTCGTGTGGATTGGCTTAAATGGCCTCAGGTTTTGAAACTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATATTCTTTGCCGTATAAAGAGTATACAGATCCTTTCAAAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTAAAGGTGTTCTAAAGCCAGACATGGGCCCAAAAACATACATTGCTTATGGATTTGCTCAAGAACTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAAGTTGAATTGAAAGATAAGAGCATTGAGGCCATCAAGAAACTGACACGAAAGCACCTCAAGCAAGACAAAAGGGAGCTACATCTACATGGTGATAATCAGGATGGACAAACCAATGCTAGCATGCTTGATAATTCATCGTCTTCCATAAATGCATCAGACGATGAGAAGGTGACTGATCCTGTTCATCATCACTCAGGTGCAGATAATGATGGCCTTTCTTCTGGATCAAAGCTCAAAAAGGTCGATAAAGTGATTGTGAAAAAAGGTAATAGTTTGTTGGCTGGGGATGATTCTTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGATGTCCCGAAATTGGAGGAATATCTAAAGAATCATTTTAGAGAGTTCAGGCATGCCCATTGCTCTCCTTTAAAGCAGGTTATTCACCCCATCCACGATCAGACCTTTTATTTGACTATTGCACATAAAAAGAGACTGAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCCGTAATCTGAAGTCATGCACCAAGGTTGCTCTTGACTTTGTCTCTCCAGAAAATGTCGGCGAGTGCTTTCGCTTGACAGAGGAGTTCCGCAAACTTCCAGTAAATCACAAGTCCACAGAGGACAAATTGGAGGTGAAGAAAATGATTATATATGCGATGCTTGACCTGGTCAAAACCTTGGAGAAAGCAAGGTCTGGGGAAACTGGAGAAACTAAGGTTCCAGTGTAA	3585	0.419	MAEEHNNTTTALTEDSIPDHPEITETPETVSFKVNDVAKDANAVSETASLKEAEEGMDIVAETASLKDGLGSVEGDDVAAGDSPTVVEPIKKYHRRRNKPGGKSNVEIEALKNEPNGEETVKADDVAGGGSDSVPPEKKKKRGVKRKTEKEGEAVEGDDVAVAVVGSSSVEGTVRKSERPRKIKSFAEDFVSVLDAEVTKNGNCKRKKAIIDVFDANNAVQEGEDVKEEKKKPGRKRKNDFSSEEDYKGAVGGESVKKEKKKPGGRRKKNGYSSEDECKPELDDENVKKKNKKLGRKSKKVYSSGEEYKAVVDSENVKKETEKPGRKRRTVSISVENGEAAEEGENGGFDKEEKKTPGRKIKIEDNELVSEKKSKSVVLKDEIQDCPEIETETPVYIDNKGYSLRKTRNTKPTLVEHVVPKINKKNPKRIEKESLMCHQCQRNDKGRVVRCTSCKRKRFCIHCITNWYPNWKEDEIAEKCPVCCGNCNCKSCLRSRVLINAIKEKTETNEDPEVGPSKYMLKELLPYLIRLDEEQMTEKEIEAKRQGLPLSELKIKVAEYSKNERVYCDNCKTSIFDYHRSCTKCSFDICLLCCCELRGGKLLGGDDPIEFEFIFRGREYLHGGDEKKQDRKENPRSAVQLEICEWSKSGWRADTDGSIPCPKTNNDCDHGFLELRSILQPNCISELVSKAKELVEEAMELQDAEENLDDRCSCLKPVRNSDDIHNNTRKAAFREDSSDNFLYCPRAVDLRQEDLRHFQSHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNTKHKTLLDVKAIDCLDWCEGDINVHQFFTGYTEGRVDWLKWPQVLKLKDWPPSNLFEESLPRHCAEFIYSLPYKEYTDPFKGALNLAVKLPKGVLKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELKDKSIEAIKKLTRKHLKQDKRELHLHGDNQDGQTNASMLDNSSSSINASDDEKVTDPVHHHSGADNDGLSSGSKLKKVDKVIVKKGNSLLAGDDSLDGALWDIFRREDVPKLEEYLKNHFREFRHAHCSPLKQVIHPIHDQTFYLTIAHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHKSTEDKLEVKKMIIYAMLDLVKTLEKARSGETGETKVPV	1194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	1	15	-	-
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	1	27	-	-
	Vivi2g00437	1194	SUPERFAMILY	Clavaminate synthase-like	754	1173	-	-
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	956	1008	-	-
	Vivi2g00437	1194	ProSiteProfiles	Zinc finger RING-type profile.	437	483	IPR001841	-
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	268	291	-	-
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	966	988	-	-
	Vivi2g00437	1194	Coils	Coil	684	711	-	-
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	221	260	-	-
	Vivi2g00437	1194	SMART	cupin_9	856	1149	IPR003347	-
	Vivi2g00437	1194	Gene3D	Cupin	744	1158	-	-
	Vivi2g00437	1194	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	144	1184	IPR045109	GO:0032454\|GO:0033169
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	217	357	-	-
	Vivi2g00437	1194	Pfam	JmjC domain, hydroxylase	1034	1132	IPR003347	-
	Vivi2g00437	1194	ProSiteProfiles	JmjC domain profile.	875	1149	IPR003347	-
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	299	333	-	-
	Vivi2g00437	1194	MobiDBLite	consensus disorder prediction	69	155	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g00437	Vivi-Chr2	12096764	12110271	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Vivi2g00437		JmjC	2.6e-15	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g00437	K15601		-	gmx:100805723	1121.3