Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00429 ATGGAGAACGACACCGCCACCACCACCGCCACCGTCAACGGCACCGGAAATACGGCCAAAGTAGTTTCGAGCGGCGGCGGCGGAGGAGTAGGAGTCAAATCCAACAATCAAATCCGTGAAGAAGAACATTCCAATTTGAACGGCGAGGAAAACATACCAGAGAAAATGGAAGAGAAAGAAGAAGAAGATGAAGACAAAGAGGAACAACAACCACAACAACCTACTGGATCTGAAACCGCCGCTCAACAACCTTCCAGAACCCCTTTCAGTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCCAGAACTCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAGGGTGGGAGTTATTTGCATGACGATGGAGATGATTTTGATGATCTGCACGATGGAACTGATGTAGACGAGGAGGATGAGGATGACCAGGATGACGATAATGAGGAATATGAAGATGAAGATGTATTTGATGTTCATGCTCATGCTAGTGCTGGAGAGCATGATAATGCCACTATTGAATTTGACCCGGAGATGTTTTCAAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAGATGGCAGCTAGACTGTTGGCACTCGCTGGGATACATGATCTTTCGTTTTCAATTGCAGAGGACGCTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTCGATCCAGATGAACTCTCATATGAGGAGCTCCTGGCATTAGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCGGTTTGCCTTCAGTCAACTATAAGACGGGGAGTGATCAACACGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACACTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCGGGAAGCAACTTGTAG 1053 0.472 MENDTATTTATVNGTGNTAKVVSSGGGGGVGVKSNNQIREEEHSNLNGEENIPEKMEEKEEEDEDKEEQQPQQPTGSETAAQQPSRTPFSNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEEDEDDQDDDNEEYEDEDVFDVHAHASAGEHDNATIEFDPEMFSSDEAYARALQEAEEREMAARLLALAGIHDLSFSIAEDAEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTLLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00429 350 MobiDBLite consensus disorder prediction 36 54 - -
Vivi2g00429 350 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g00429 350 MobiDBLite consensus disorder prediction 141 164 - -
Vivi2g00429 350 SMART ring_2 299 339 IPR001841 -
Vivi2g00429 350 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Vivi2g00429 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 346 IPR013083 -
Vivi2g00429 350 MobiDBLite consensus disorder prediction 122 164 - -
Vivi2g00429 350 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 42 348 IPR043312 -
Vivi2g00429 350 MobiDBLite consensus disorder prediction 72 94 - -
Vivi2g00429 350 SUPERFAMILY RING/U-box 290 344 - -
Vivi2g00429 350 Pfam Ring finger domain 297 339 IPR001841 -
Vivi2g00429 350 MobiDBLite consensus disorder prediction 1 94 - -
Vivi2g00429 350 FunFam E3 ubiquitin ligase BIG BROTHER-related 265 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00429 Vivi-Chr2 12037561 12042916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00429 71 234 C3H Transcription Factor Family AT3G19910 47.953 1.39e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00429 K19045 - gmx:100787418 453.366