Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00428 ATGGAGAACGACACCGCCACCACCACCGCCACCGTCAACGGCACCGGAAATACGGCCAAAGTAGTTTCGAGCGGCGGCGGCGGAGGAGTAGGAGTCAAATCCAACAATCAAATCCGTGAAGAAGAACATTCCAATTTGAACGGCGAGGAAAACATACCAGAGAAAATGGAAGAGAAAGAAGAAGAAGATGAAGACAAAGAGGAACAACAACCACAACAACCTACTGGATCTGAAACCGCCGCTCAACAACCTTCCAGAACCCCTTTCAGTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCCAGAACTCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAGGGTGGGAGTTATTTGCATGACGATGGAGATGATTTTGATGATCTGCACGATGGAACTGATGTAGACGAGGAGGATGAGGATGACCAGGATGACGATAATGAGGAATATGAAGATGAAGATGTATTTGATGTTCATGCTCATGCTAGTGCTGGAGAGCATGATAATGCCACTATTGAATTTGACCCGGAGATGTTTTCAAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAGATGGCAGCTAGACTGTTGGCACTCGCTGGGATACATGATCAGGACGCTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTCGATCCAGATGAACTCTCATATGAGGAGCTCCTGGCATTAGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCGGTTTGCCTTCAGTCAACTATAAGACGGGGAGTGATCAACACGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACACTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCGGGAAGCAACTTGTAG 1035 0.4744 MENDTATTTATVNGTGNTAKVVSSGGGGGVGVKSNNQIREEEHSNLNGEENIPEKMEEKEEEDEDKEEQQPQQPTGSETAAQQPSRTPFSNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEEDEDDQDDDNEEYEDEDVFDVHAHASAGEHDNATIEFDPEMFSSDEAYARALQEAEEREMAARLLALAGIHDQDAEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTLLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00428 344 MobiDBLite consensus disorder prediction 36 54 - -
Vivi2g00428 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Vivi2g00428 344 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g00428 344 MobiDBLite consensus disorder prediction 141 164 - -
Vivi2g00428 344 FunFam E3 ubiquitin ligase BIG BROTHER-related 259 340 - -
Vivi2g00428 344 SUPERFAMILY RING/U-box 284 338 - -
Vivi2g00428 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 42 342 IPR043312 -
Vivi2g00428 344 Pfam Ring finger domain 291 333 IPR001841 -
Vivi2g00428 344 MobiDBLite consensus disorder prediction 122 164 - -
Vivi2g00428 344 MobiDBLite consensus disorder prediction 72 94 - -
Vivi2g00428 344 SMART ring_2 293 333 IPR001841 -
Vivi2g00428 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 340 IPR013083 -
Vivi2g00428 344 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00428 Vivi-Chr2 12037561 12042916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00428 71 237 C3H Transcription Factor Family AT3G19910 47.126 2.98e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00428 K19045 - gmx:100787418 460.299