Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00427 ATGGAGAACGACACCGCCACCACCACCGCCACCGTCAACGGCACCGGAAATACGGCCAAAGTAGTTTCGAGCGGCGGCGGCGGAGGAGTAGGAGTCAAATCCAACAATCAAATCCGTGAAGAAGAACATTCCAATTTGAACGGCGAGGAAAACATACCAGAGAAAATGGAAGAGAAAGAAGAAGAAGATGAAGACAAAGAGGAACAACAACCACAACAACCTACTGGATCTGAAACCGCCGCTCAACAACCTTCCAGAACCCCTTTCAGTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCCAGAACTCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAGGGTGGGAGTTATTTGCATGACGATGGAGATGATTTTGATGATCTGCACGATGGAACTGATGTAGACGAGGAGGATGAGGATGACCAGGATGACGATAATGAGGAATATGAAGATGAAGATGTATTTGATGTTCATGCTCATGCTAGTGCTGGAGAGCATGATAATGCCACTATTGAATTTGACCCGGAGATGTTTTCAAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAGATGGCAGCTAGACTGTTGGCACTCGCTGGGATACATGATCAATCTCTAGTTTCGTTTTCAATTGCAGAGGACGCTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTCGATCCAGATGAACTCTCATATGAGGAGCTCCTGGCATTAGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCGGTTTGCCTTCAGTCAACTATAAGACGGGGAGTGATCAACACGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACACTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCGGGAAGCAACTTGTAG 1062 0.4708 MENDTATTTATVNGTGNTAKVVSSGGGGGVGVKSNNQIREEEHSNLNGEENIPEKMEEKEEEDEDKEEQQPQQPTGSETAAQQPSRTPFSNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEEDEDDQDDDNEEYEDEDVFDVHAHASAGEHDNATIEFDPEMFSSDEAYARALQEAEEREMAARLLALAGIHDQSLVSFSIAEDAEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTLLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00427 353 SMART ring_2 302 342 IPR001841 -
Vivi2g00427 353 MobiDBLite consensus disorder prediction 36 54 - -
Vivi2g00427 353 Pfam Ring finger domain 300 342 IPR001841 -
Vivi2g00427 353 MobiDBLite consensus disorder prediction 141 164 - -
Vivi2g00427 353 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g00427 353 SUPERFAMILY RING/U-box 293 347 - -
Vivi2g00427 353 FunFam E3 ubiquitin ligase BIG BROTHER-related 268 349 - -
Vivi2g00427 353 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 42 351 IPR043312 -
Vivi2g00427 353 MobiDBLite consensus disorder prediction 122 164 - -
Vivi2g00427 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 349 IPR013083 -
Vivi2g00427 353 MobiDBLite consensus disorder prediction 72 94 - -
Vivi2g00427 353 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
Vivi2g00427 353 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00427 Vivi-Chr2 12037561 12042918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00427 71 237 C3H Transcription Factor Family AT3G19910 46.552 3.92e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00427 K19045 - gmx:100787418 452.595