Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00418 ATGTCTTCTGGCGGCGGCGACGGCGGTGGCGGAAAGCTATACTTCTGCCACAATTGCACTCAAAGAGTTACCTGCTCGGAGGATTCCGAGCCTTTCTGTCCAATCTGCTTTCAAGGTTTCATTGAAGAATGCACTCCCGATCCAAACCCTAACCCTAACGTCATTTTTCGTTTCAACCAAGACGATTCCGATAACGAATCCGATTTCCCCTTCCATCCTTTTTCTCTTCTCCCTTTGTTGCTTTCTTCTGCTTCCATTTCACGGACCCGGCTCGAAACCGCCGAACCGGAGACCGATAATTTCGACCCGATCACTTTCCTTCAGAATCATCTTAACGGCCTTCATGCTGATGGTGCTAATATTCAGTTCGAGATCAATCAAGGTTCTGATTCCGAATCAGGGTTTCGTATTCCGTCTAACATGGGAGATTACTTCCTTGGTCCTGGTCTCGAGCAATTGATTCAGCAGCTTGCTGAGAATGATCCTAACCGGTATGGAACACCGCCGGCGTCGAAAGAGGCTGTTCAGAATCTACCAAGTGTTACTGTTGATGATGAGTTGTTGAACTCGGAGATGAACCAGTGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGCTTGCAGGTGAAGCAAATGCCTTGTAAGCATGTGTATCATGATGATTGCTTGCTTCCGTGGCTTCAATTGCATAACTCGTGCCCTGTTTGTCGATATGAATTGCCTACTGATGATGCGGATTATGAGAACCGGGATGGGAGCAGTGGTGGTGGTGGCGGCGATGGTTTGAGGTCTGTTGTTGATGGGAGCGGTACTGGTGGTGGTGGTGGTGGAGGAGGAAATAGACCTGTCCACAGGACTTTTAGAATATCTTTGCGGTATCCTTTTGATTCTGGTAACTCTGATCAGGACTCTGATGGAAGGGGATTGGGAAATAGGCAAGAAGATTTGGATTGA 951 0.4784 MSSGGGDGGGGKLYFCHNCTQRVTCSEDSEPFCPICFQGFIEECTPDPNPNPNVIFRFNQDDSDNESDFPFHPFSLLPLLLSSASISRTRLETAEPETDNFDPITFLQNHLNGLHADGANIQFEINQGSDSESGFRIPSNMGDYFLGPGLEQLIQQLAENDPNRYGTPPASKEAVQNLPSVTVDDELLNSEMNQCAVCQDEFEKGLQVKQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDADYENRDGSSGGGGGDGLRSVVDGSGTGGGGGGGGNRPVHRTFRISLRYPFDSGNSDQDSDGRGLGNRQEDLD 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00418 316 Pfam Ring finger domain 193 236 IPR001841 -
Vivi2g00418 316 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Vivi2g00418 316 Pfam zinc-ribbon 13 43 IPR039525 GO:0061630
Vivi2g00418 316 FunFam E3 ubiquitin-protein ligase RING1-like 156 242 - -
Vivi2g00418 316 MobiDBLite consensus disorder prediction 246 316 - -
Vivi2g00418 316 SUPERFAMILY RING/U-box 174 242 - -
Vivi2g00418 316 SMART ring_2 195 235 IPR001841 -
Vivi2g00418 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 93 240 - -
Vivi2g00418 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 242 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00418 Vivi-Chr2 11914869 11917229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00418 139 247 C3H Transcription Factor Family AT5G01980 48.624 7.76e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00418 K11982 - gmx:100785289 374.4