Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00392 ATGCTTGATAATGTGGACAATATTCATCATTTCATCGACTCAACTTGGAGACTATGTACTCATCTAGTTTCTTGGGTTTCTGGTTTAATTTCAAAACCTAACAAAAAAGTGGTTCGCTCAATTTCTAGTTCGGCCGAGGAAAGAGAAAGTTGTTATCTAGATTCCATGGATATTGCGTATATAGATATTAGTTCGTCGGATGATGAGTTGGAGGAGATATTAGATCCTGGGAGAATTCTCCCAAGATGGGCTGCTTCTGAAAGGAATTCAGATTCAAGAAGGGCAAATGGCAACACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATTCTCATGGTACCGATTATCAGAAAATGTCATCTCAACAAGGTTTAAAGAGGACCGTTCCATCATCTTTTCAACCTGGTCCTAGCAATGGAAACACAAGTCAACATCAGACAGTAAATTCCCGAATTTTTAATTCTCATGGTACCGATTATCAGAAAATGTCATCTCAACAAGCTTTCAAGAGGACCCTTCCATCAACTTTTCAATCTGAAACAAGGGCTTTTCCAACTTCATCGTTTGTTCCTAATAACAGAGTAAGCAACTTAAGTAGCAGTCAGCTTCATGATGCATACAGGAGTCGTCCCCATGGAGTAGGACCTAGCACGTCCGGTGAGAAGGGTTTTTTTCGTGACATTGGCAGAGGCAATGATGGAGATCGTTTCATGAATCAGAATGGTGGGACCAGAGCTCTTCCTCCATCTTTGATGAATGGAAAGGCAATAACTCCTCCATTTGCTAGTTCTAGTGAATCAGCATACCGTTCTGGAGTAGGTGATGAAAGGGCTCCTGAAACTGATGAGAGACTAATTTATGAAGCAGCATTACAGGATATTAGTCAACCATTAAAAGAAGCCGATTTGCCTCCTGGTATAATGGCTGTCCCTCTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAACAATTGCTCTCATCCTAATGCAAAGGCAATCACAGATAAAATGGAAAACAGATGATACATGTAACCATAAAGCTGAAGCCTTGAATTTGGATGACGATGATGATAATGGTAGTATTGATGTGGAAAAGCTTAAAAATGATGAAGAGTCCACTGATACAAAACCTATTATTGAACCGAGTAGTTCAACACGGGCACCAAGCAGGAAAAGGCCTGCTGCTGGTACATTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAACTTGAAGAGAAAGTTGGAGATGAAAAGCTTTCTGTCTTGATCTTTCACGGAGGCAGTAGGACAAAGGATCCTGTTGAACTTGCGAAATATGACGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAGCAACCGTTAGTTGAGGATGATGATATGGATGAAAAAGATGGAGAAAACTTTGGCTTATCCTCTGATTTTGCTGTAAAAAAAAAGAGGAAAAAGACATATAATGGAAGCAAGAAGGGTAAAAAAGGTAAAAAGGGAATAGACGGTTCTTCTTTCGATTCTGCTTCTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACGCCTATTCAGAATACTATTGATGATTTATATAGCTACTTTAGGTTTCTGAAGTATGATCCTTATGCTGTGTATAAATCATTTTACTCTTCATTAAAAGTTCCAATATCCAGAAATTCAATTCAAGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCGATAATCACTTTACCACCTAAAACAATTAATTTGAGTAAGGTGGATTTCTCGTATGAAGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCGGCTGCTGGCACAGTGAATCAAAACTATGCGAATATTCTTCTGATGCTTTTACGTCTCCGTCAGGCCTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTCTGGAAACAACTGCCGCTATATGTTGTGTCTGCAATGATCCACCCGACGATGCTGTTATTTCAATGTGTGGCCATGTCTTTTGTTATCAATGTGTATCAGAACATTTGACAGGTGACGATAATATGTGCCCTGCAAATCATTGTAAAGAACAAATTGGTGAAGATCTTGTGTTCTCCAAAGCAACTTTAAGGAGTTGCATCTCTGACGATCTTAGTGGCAGTAGTTCTGGAAGTTCAAGCCTTGTTGATTATTCAATAGTACAAAATAGTGATTACAGCTCTTCTAAAATCAAAGCCGTCCTTGAAGTTCTGCAGTCAAGTTGCAGATTGAAGTCTACTTCTGGCAATAGAGATTCACCGCCTTCTGATGATTCAGATATTGAAGATTTTGATTCAGATGTCAAGGTTACAAGAGTCACAAGAAATTTTTCAGAATGCACAACTGGTGGACCACTGAAGGCTATAATTTTTTCTCAATGGACTACCATGTTGGACTTGGTTGAGACATCAATGGAGCAGTCTGGCATAAAATACAGGAGACTTGATGGTAGGATGACTCTGACTGCGAGGGATAGAGCTGTTAAAGATTTCAATACTGATTCTGAGATTACTGTTATGCTGATGTCTCTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCCGTTACTGTGACACGGATCACCATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGATGAAAAAAGAAAAATGGTGGCGTCTGCTTTCGGTGAAGACCATGCTGGAGGTTCTGGAACTCGGCTTACAGTTGACGATCTTAAATATCTTTTCATGGTATAG 3171 0.4027 MLDNVDNIHHFIDSTWRLCTHLVSWVSGLISKPNKKVVRSISSSAEERESCYLDSMDIAYIDISSSDDELEEILDPGRILPRWAASERNSDSRRANGNTSQHQTVNSRISNSHGTDYQKMSSQQGLKRTVPSSFQPGPSNGNTSQHQTVNSRIFNSHGTDYQKMSSQQAFKRTLPSTFQSETRAFPTSSFVPNNRVSNLSSSQLHDAYRSRPHGVGPSTSGEKGFFRDIGRGNDGDRFMNQNGGTRALPPSLMNGKAITPPFASSSESAYRSGVGDERAPETDERLIYEAALQDISQPLKEADLPPGIMAVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQIKWKTDDTCNHKAEALNLDDDDDNGSIDVEKLKNDEESTDTKPIIEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELEEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLVEDDDMDEKDGENFGLSSDFAVKKKRKKTYNGSKKGKKGKKGIDGSSFDSASGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYSSLKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTINLSKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICCVCNDPPDDAVISMCGHVFCYQCVSEHLTGDDNMCPANHCKEQIGEDLVFSKATLRSCISDDLSGSSSGSSSLVDYSIVQNSDYSSSKIKAVLEVLQSSCRLKSTSGNRDSPPSDDSDIEDFDSDVKVTRVTRNFSECTTGGPLKAIIFSQWTTMLDLVETSMEQSGIKYRRLDGRMTLTARDRAVKDFNTDSEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00392 1056 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 522 654 - -
Vivi2g00392 1056 Gene3D - 657 1055 IPR027417 -
Vivi2g00392 1056 MobiDBLite consensus disorder prediction 861 880 - -
Vivi2g00392 1056 SMART ultradead3 309 621 IPR014001 -
Vivi2g00392 1056 Pfam Helicase conserved C-terminal domain 903 998 IPR001650 -
Vivi2g00392 1056 Pfam SNF2-related domain 316 719 IPR000330 GO:0005524|GO:0140658
Vivi2g00392 1056 MobiDBLite consensus disorder prediction 388 404 - -
Vivi2g00392 1056 Gene3D - 511 655 IPR038718 -
Vivi2g00392 1056 Gene3D - 288 372 IPR038718 -
Vivi2g00392 1056 Gene3D - 407 495 IPR038718 -
Vivi2g00392 1056 SUPERFAMILY RING/U-box 756 810 - -
Vivi2g00392 1056 SMART helicmild6 915 998 IPR001650 -
Vivi2g00392 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 642 IPR027417 -
Vivi2g00392 1056 Pfam Zinc finger, C3HC4 type (RING finger) 758 794 IPR018957 GO:0046872
Vivi2g00392 1056 MobiDBLite consensus disorder prediction 378 421 - -
Vivi2g00392 1056 CDD SF2_C_SNF 878 1007 - -
Vivi2g00392 1056 ProSiteProfiles Zinc finger RING-type profile. 758 797 IPR001841 -
Vivi2g00392 1056 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 407 493 - -
Vivi2g00392 1056 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 746 808 IPR013083 -
Vivi2g00392 1056 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 328 604 IPR014001 -
Vivi2g00392 1056 SMART ring_2 758 796 IPR001841 -
Vivi2g00392 1056 MobiDBLite consensus disorder prediction 85 147 - -
Vivi2g00392 1056 ProSitePatterns Zinc finger RING-type signature. 773 782 IPR017907 -
Vivi2g00392 1056 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 888 1051 IPR001650 -
Vivi2g00392 1056 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 88 1055 - -
Vivi2g00392 1056 MobiDBLite consensus disorder prediction 90 147 - -
Vivi2g00392 1056 CDD DEXDc_SHPRH-like 313 642 - -
Vivi2g00392 1056 MobiDBLite consensus disorder prediction 204 253 - -
Vivi2g00392 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 1055 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00392 Vivi-Chr2 11648889 11657156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00392 56 956 RAD5 or RAD16-like Gene Family AT1G50410 56.163 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g00392 SNF2_N 4.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00392 - - gmx:100795142 1432.54