Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00391 ATGGATATTGCGTATATAGATATTAGTTCGTCGGATGATGAGTTGGAGGAGATATTAGATCCTGGGAGAATTCTCCCAAGATGGGCTGCTTCTGAAAGGAATTCAGATTCAAGAAGGGCAAATGGCAACACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATTCTCATGGTACCGATTATCAGAAAATGTCATCTCAACAAGGTTTAAAGAGGACCGTTCCATCATCTTTTCAACCTGGTCCTAGCAATGGAAACACAAGTCAACATCAGACAGTAAATTCCCGAATTTTTAATTCTCATGGTACCGATTATCAGAAAATGTCATCTCAACAAGCTTTCAAGAGGACCCTTCCATCAACTTTTCAATCTGAAACAAGGGCTTTTCCAACTTCATCGTTTGTTCCTAATAACAGAGTAAGCAACTTAAGTAGCAGTCAGCTTCATGATGCATACAGGAGTCGTCCCCATGGAGTAGGACCTAGCACGTCCGGTGAGAAGGGTTTTTTTCGTGACATTGGCAGAGGCAATGATGGAGATCGTTTCATGAATCAGAATGGTGGGACCAGAGCTCTTCCTCCATCTTTGATGAATGGAAAGGCAATAACTCCTCCATTTGCTAGTTCTAGTGAATCAGCATACCGTTCTGGAGTAGGTGATGAAAGGGCTCCTGAAACTGATGAGAGACTAATTTATGAAGCAGCATTACAGGATATTAGTCAACCATTAAAAGAAGCCGATTTGCCTCCTGGTATAATGGCTGTCCCTCTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAACAATTGCTCTCATCCTAATGCAAAGGCAATCACAGATAAAATGGAAAACAGATGATACATGTAACCATAAAGCTGAAGCCTTGAATTTGGATGACGATGATGATAATGGTAGTATTGATGTGGAAAAGCTTAAAAATGATGAAGAGTCCACTGATACAAAACCTATTATTGAACCGAGTAGTTCAACACGGGCACCAAGCAGGAAAAGGCCTGCTGCTGGTACATTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAACTTGAAGAGAAAGTTGGAGATGAAAAGCTTTCTGTCTTGATCTTTCACGGAGGCAGTAGGACAAAGGATCCTGTTGAACTTGCGAAATATGACGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAGCAACCGTTAGTTGAGGATGATGATATGGATGAAAAAGATGGAGAAAACTTTGGCTTATCCTCTGATTTTGCTGTAAAAAAAAAGAGGAAAAAGACATATAATGGAAGCAAGAAGGGTAAAAAAGGTAAAAAGGGAATAGACGGTTCTTCTTTCGATTCTGCTTCTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACGCCTATTCAGAATACTATTGATGATTTATATAGCTACTTTAGGTTTCTGAAGTATGATCCTTATGCTGTGTATAAATCATTTTACTCTTCATTAAAAGTTCCAATATCCAGAAATTCAATTCAAGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCGATAATCACTTTACCACCTAAAACAATTAATTTGAGTAAGGTGGATTTCTCGTATGAAGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCGGCTGCTGGCACAGTGAATCAAAACTATGCGAATATTCTTCTGATGCTTTTACGTCTCCGTCAGGCCTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTCTGGAAACAACTGCCGCTATATGTTGTGTCTGCAATGATCCACCCGACGATGCTGTTATTTCAATGTGTGGCCATGTCTTTTGTTATCAATGTGTATCAGAACATTTGACAGGTGACGATAATATGTGCCCTGCAAATCATTGTAAAGAACAAATTGGTGAAGATCTTGTGTTCTCCAAAGCAACTTTAAGGAGTTGCATCTCTGACGATCTTAGTGGCAGTAGTTCTGGAAGTTCAAGCCTTGTTGATTATTCAATAGTACAAAATAGTGATTACAGCTCTTCTAAAATCAAAGCCGTCCTTGAAGTTCTGCAGTCAAGTTGCAGATTGAAGTCTACTTCTGGCAATAGAGATTCACCGCCTTCTGATGATTCAGATATTGAAGATTTTGATTCAGATGTCAAGGTTACAAGAGTCACAAGAAATTTTTCAGAATGCACAACTGGTGGACCACTGAAGGCTATAATTTTTTCTCAATGGACTACCATGTTGGACTTGGTTGAGACATCAATGGAGCAGTCTGGCATAAAATACAGGAGACTTGATGGTAGGATGACTCTGACTGCGAGGGATAGAGCTGTTAAAGATTTCAATACTGATTCTGAGATTACTGTTATGCTGATGTCTCTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCCGTTACTGTGACACGGATCACCATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGATGAAAAAAGAAAAATGGTGGCGTCTGCTTTCGGTGAAGACCATGCTGGAGGTTCTGGAACTCGGCTTACAGTTGACGATCTTAAATATCTTTTCATGGTATAG 3006 0.4049 MDIAYIDISSSDDELEEILDPGRILPRWAASERNSDSRRANGNTSQHQTVNSRISNSHGTDYQKMSSQQGLKRTVPSSFQPGPSNGNTSQHQTVNSRIFNSHGTDYQKMSSQQAFKRTLPSTFQSETRAFPTSSFVPNNRVSNLSSSQLHDAYRSRPHGVGPSTSGEKGFFRDIGRGNDGDRFMNQNGGTRALPPSLMNGKAITPPFASSSESAYRSGVGDERAPETDERLIYEAALQDISQPLKEADLPPGIMAVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQIKWKTDDTCNHKAEALNLDDDDDNGSIDVEKLKNDEESTDTKPIIEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELEEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLVEDDDMDEKDGENFGLSSDFAVKKKRKKTYNGSKKGKKGKKGIDGSSFDSASGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYSSLKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTINLSKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICCVCNDPPDDAVISMCGHVFCYQCVSEHLTGDDNMCPANHCKEQIGEDLVFSKATLRSCISDDLSGSSSGSSSLVDYSIVQNSDYSSSKIKAVLEVLQSSCRLKSTSGNRDSPPSDDSDIEDFDSDVKVTRVTRNFSECTTGGPLKAIIFSQWTTMLDLVETSMEQSGIKYRRLDGRMTLTARDRAVKDFNTDSEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00391 1001 Pfam Zinc finger, C3HC4 type (RING finger) 703 739 IPR018957 GO:0046872
Vivi2g00391 1001 Gene3D - 233 317 IPR038718 -
Vivi2g00391 1001 Gene3D - 456 600 IPR038718 -
Vivi2g00391 1001 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 467 599 - -
Vivi2g00391 1001 CDD SF2_C_SNF 823 952 - -
Vivi2g00391 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 587 IPR027417 -
Vivi2g00391 1001 MobiDBLite consensus disorder prediction 323 366 - -
Vivi2g00391 1001 SMART ultradead3 254 566 IPR014001 -
Vivi2g00391 1001 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 53 1000 - -
Vivi2g00391 1001 Pfam SNF2-related domain 261 664 IPR000330 GO:0005524|GO:0140658
Vivi2g00391 1001 CDD DEXDc_SHPRH-like 258 587 - -
Vivi2g00391 1001 SUPERFAMILY RING/U-box 701 755 - -
Vivi2g00391 1001 MobiDBLite consensus disorder prediction 333 349 - -
Vivi2g00391 1001 SMART helicmild6 860 943 IPR001650 -
Vivi2g00391 1001 MobiDBLite consensus disorder prediction 30 92 - -
Vivi2g00391 1001 SMART ring_2 703 741 IPR001841 -
Vivi2g00391 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 1000 IPR027417 -
Vivi2g00391 1001 Gene3D - 602 1000 IPR027417 -
Vivi2g00391 1001 MobiDBLite consensus disorder prediction 35 92 - -
Vivi2g00391 1001 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 352 438 - -
Vivi2g00391 1001 ProSiteProfiles Zinc finger RING-type profile. 703 742 IPR001841 -
Vivi2g00391 1001 MobiDBLite consensus disorder prediction 806 825 - -
Vivi2g00391 1001 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 833 996 IPR001650 -
Vivi2g00391 1001 Pfam Helicase conserved C-terminal domain 848 943 IPR001650 -
Vivi2g00391 1001 Gene3D - 352 440 IPR038718 -
Vivi2g00391 1001 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 549 IPR014001 -
Vivi2g00391 1001 MobiDBLite consensus disorder prediction 149 201 - -
Vivi2g00391 1001 ProSitePatterns Zinc finger RING-type signature. 718 727 IPR017907 -
Vivi2g00391 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 753 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00391 Vivi-Chr2 11648793 11657156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00391 1 901 RAD5 or RAD16-like Gene Family AT1G50410 56.163 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g00391 SNF2_N 6.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00391 - - gmx:100795142 1432.54