Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00388 ATGACGAAGGGTACGAAAAGGGTTGACGCTGTTGATTCCGCTACAGTTCTCGTTCGTGCCAAAGATGGCAGTGCCTTCGCCAAATGTGATGAGTGTAAGAAGAATGTTCCTGTCGCACTCATTAGCATGCATGATTGCAGCCTTGAAGCCAAAATCAAAATGAATCTTGATTCTCATGTTGTAGAGCAAGCTGCTGCTGATGCCAAGAAACCTGAGAGGAAGAAGCCTAGTACTAAAGAACCAGCTGCAAAAAGGGCTAAGGGTGGAAAAGATAAGAAAGAGAAGAAGGTTAAGGATCCCAACATGCCCAAACGTCCTGCTACTGCTTTCTTTGTTTTTATGGATGATTTTAGAAAAACTTTCAAGGAAGCTAATCCTGATTCAAAGGATGTTAAGAGGGTTGCTAAGGAAGGGGGTGAGAAGTGGAAGTCTTTGACTGATGAAGAGAAGAAGCCTTATTTGGATAGAGTTGCTGAGCTCAAGGCAGAATATGAGAAGGCTATGGAAGCCTATAATGCTGGTGAAAAAGAAGATCAAGAGGGATCTGATAAGTCTGATAAGGAAGCCCCTGCTGCAGGAGAGGTTGAAGAGTTAACTGATGAAGAGTAG 609 0.4335 MTKGTKRVDAVDSATVLVRAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVVEQAAADAKKPERKKPSTKEPAAKRAKGGKDKKEKKVKDPNMPKRPATAFFVFMDDFRKTFKEANPDSKDVKRVAKEGGEKWKSLTDEEKKPYLDRVAELKAEYEKAMEAYNAGEKEDQEGSDKSDKEAPAAGEVEELTDEE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00388 202 MobiDBLite consensus disorder prediction 63 105 - -
Vivi2g00388 202 MobiDBLite consensus disorder prediction 169 202 - -
Vivi2g00388 202 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 103 172 IPR009071 -
Vivi2g00388 202 CDD HMG-box_AtHMGB1-like 104 164 - -
Vivi2g00388 202 MobiDBLite consensus disorder prediction 63 102 - -
Vivi2g00388 202 Gene3D High mobility group box domain 86 187 IPR036910 -
Vivi2g00388 202 MobiDBLite consensus disorder prediction 124 150 - -
Vivi2g00388 202 SUPERFAMILY HMG-box 90 172 IPR036910 -
Vivi2g00388 202 SMART hmgende2 102 173 IPR009071 -
Vivi2g00388 202 MobiDBLite consensus disorder prediction 169 194 - -
Vivi2g00388 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 5 198 - -
Vivi2g00388 202 Coils Coil 157 177 - -
Vivi2g00388 202 Pfam HMG (high mobility group) box 103 172 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00388 Vivi-Chr2 11517876 11519468 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vivi2g00388 HMG_box 3.2e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00388 K25507 - gmx:100810345 282.337