Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00353 ATGAAGAGAGAAAGAGAAAGTGATCATCATAATACTAATAGCATAACCATGGCTAAGTATTTGATGTATCTTTCTGGTGGAGGTCAACAACTTGATCAAGTGAATTACTCTTCAAATTTCAACAACCGTGTGTACGAGTGCAAGACATGTAAGCGACAGTTTTCGTCGTTTCAAGCGTTGGGAGGACACCGTGCGAGTCACAAGAAACCGAGGTTGATGGAGATGAATAGCAACGGAGATGATGGAATGTTTACAACAACAACAAAGGCTAAAACACATGAATGTTCAATTTGTGGATTGGAGTTTTCAATAGGACAAGCTTTGGGTGGTCACATGAGGAGACACAGAAGAGTTTCGAATAATTTAAAGGGAAATATGAACACTTTTATCAACAATACTGCGACCACCAATAGTAATAACAGCGATTGCAGTACCATTGATAATAGTACTAATACTAATTTAGCAAAGAGCCTAAAGTTGAATACCAAGAGATTTTTGTTTCTGGATTTGAATTTGACACCTTTAGAGAATGATTTGAAGATTTTGAAGATTGGACAATCAACTCCTAATCTGGTGGACTGTTTCAATTGA 591 0.3706 MKRERESDHHNTNSITMAKYLMYLSGGGQQLDQVNYSSNFNNRVYECKTCKRQFSSFQALGGHRASHKKPRLMEMNSNGDDGMFTTTTKAKTHECSICGLEFSIGQALGGHMRRHRRVSNNLKGNMNTFINNTATTNSNNSDCSTIDNSTNTNLAKSLKLNTKRFLFLDLNLTPLENDLKILKIGQSTPNLVDCFN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00353 196 SUPERFAMILY beta-beta-alpha zinc fingers 43 115 IPR036236 -
Vivi2g00353 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Vivi2g00353 196 PANTHER ZINC FINGER PROTEIN ZAT5 14 177 - -
Vivi2g00353 196 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Vivi2g00353 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Vivi2g00353 196 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vivi2g00353 196 Gene3D Classic Zinc Finger 42 115 - -
Vivi2g00353 196 SMART c2h2final6 45 67 IPR013087 -
Vivi2g00353 196 SMART c2h2final6 93 115 IPR013087 -
Vivi2g00353 196 Pfam C2H2-type zinc finger 44 70 - -
Vivi2g00353 196 Pfam C2H2-type zinc finger 93 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00353 Vivi-Chr2 11018427 11019289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00353 29 194 C2H2 Transcription Factor Family AT2G28200 38.579 8.58e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g00353 zf-C2H2_6 3.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00353 - - psat:127098085 310.842