Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00345 ATGGTTCTATCGAATAAGAAGCTTAAGCAGAAGCTTAGAGCTGAATTAACCCTAAACCAAACCAACACCGAATCGAATCCCTCATCTTCATCTTCCAACTCATTCAAACTTCTTCTAAACTCTTCCACCAACAAACCCATTTTGTCCAAGAGAGAGAAACTCCGAAAGATTCGACCTTTGCAACCACAAACTCAAACCAATGAGGATGAAATTGCGATTGAAGGTTTGGGAAAGAAGAACAATAAGAAGAGGAAGATAAAGGAAGTGAAACAGAATGATGGTGATGATGGTGATGATGTGAGTAATGAGGTTGTTGTTAAGAAGGGGAAAGTGAAGGTAGAGGAACAGAATGGTGATGAGGTTGTTGTTAAGGTGACGAAACAATCGGTGAAAAAGGAGAAGCAGAAGAAGAAGAATCTGTTGAAGAAGAAGAGGAAGAAGGCCAAAGCTGCAGAGGAAAATGGTAAGGTGAAAACTGGTGAGGAAAATGGTGAGGTCACAGCTGCTGAGGGAAGTGGTTCTAATCATCAAGAGGAGATGTCGGAGCTTACGACAGAGTTGGCTAATACCAATATCAATACCAGTCAAGAAAACAGTGATGCTGTTACAAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGACATTCATAGTTATTTTGAAAGCTGCGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGCAAGTTCAGAGGGATTGCAATAATCGTTTTTAAGACTGAAGCAGCGGCGAAACGAGCATTGGCTCTTGATGGATCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAGCTCAAACAGCCCGATTTACCCCAGAACTGAAGGAGGGATATAATAGAATCTACGTTGGAAGTTTATCATGGGAAATAACAGAGGAAGAACTGAGGAAATTCTTCTCAAATTGCAATATAAAGTCCATACGATTTGGAAAGGACAAGGAAACAGGAGAATTCCGAGGGTATGCTCATGTGGATTTCAGTGATAGTAAGTCACTGAAAACAGCACTTGCATTGGATCAAAGTGTCTTGTTTGGAAGGCCTGTCCGGATAAGTTGCGCAGTTCCTTTGAATAAAAAACCAGGTGCAGGTGAAAAATCAGTCCCAGGCTCGAAACCAAGTGCAGCTGAAAAATCAGTTGCAGGTTCTAAACCTAGTGCGGGTGAAAAATCATTTGCAAGTTCTAAACCAGGTGCGGGTGAAAAGTCATTTGCAAGTTCTAAACCAGGTGCGGCTGAAAAATCAGTTGCAGGTTCTAAACCAGGTGCGGCAGAAAAATCAGTTGCAGGTTCTAAACCAGGTGCGGGTGAAAAATCATTTGCAGGTGAAAAATCATTTGCAGGCGAAAAATCTGTTGCAGTTGAGGAACCAACTGTTGAGAAACCAATTACCGTTGTTGCAAGTGGCAAGAGGAAGAATAGGATGTGCTACGGGTGTCGTCAAAAAGGACATAATCTCTCAGAATGTCCAAACCCACAAATAGCCACTTCTACTACAATCTAA 1548 0.416 MVLSNKKLKQKLRAELTLNQTNTESNPSSSSSNSFKLLLNSSTNKPILSKREKLRKIRPLQPQTQTNEDEIAIEGLGKKNNKKRKIKEVKQNDGDDGDDVSNEVVVKKGKVKVEEQNGDEVVVKVTKQSVKKEKQKKKNLLKKKRKKAKAAEENGKVKTGEENGEVTAAEGSGSNHQEEMSELTTELANTNINTSQENSDAVTKVYVGGIPYYSSEDDIHSYFESCGTITEINCMTFPDTGKFRGIAIIVFKTEAAAKRALALDGSDMGGLFLKIQPYKAAQTARFTPELKEGYNRIYVGSLSWEITEEELRKFFSNCNIKSIRFGKDKETGEFRGYAHVDFSDSKSLKTALALDQSVLFGRPVRISCAVPLNKKPGAGEKSVPGSKPSAAEKSVAGSKPSAGEKSFASSKPGAGEKSFASSKPGAAEKSVAGSKPGAAEKSVAGSKPGAGEKSFAGEKSFAGEKSVAVEEPTVEKPITVVASGKRKNRMCYGCRQKGHNLSECPNPQIATSTTI 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00345 515 MobiDBLite consensus disorder prediction 146 160 - -
Vivi2g00345 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 371 IPR000504 GO:0003723
Vivi2g00345 515 Coils Coil 123 154 - -
Vivi2g00345 515 MobiDBLite consensus disorder prediction 15 47 - -
Vivi2g00345 515 MobiDBLite consensus disorder prediction 375 470 - -
Vivi2g00345 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Vivi2g00345 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
Vivi2g00345 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Vivi2g00345 515 MobiDBLite consensus disorder prediction 133 181 - -
Vivi2g00345 515 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 78 281 - -
Vivi2g00345 515 SMART rrm1_1 204 276 IPR000504 GO:0003723
Vivi2g00345 515 SMART rrm1_1 296 367 IPR000504 GO:0003723
Vivi2g00345 515 CDD RRM1_PHIP1 205 276 IPR034361 -
Vivi2g00345 515 Gene3D - 287 377 IPR012677 -
Vivi2g00345 515 SUPERFAMILY RNA-binding domain, RBD 192 280 IPR035979 GO:0003676
Vivi2g00345 515 SUPERFAMILY RNA-binding domain, RBD 288 385 IPR035979 GO:0003676
Vivi2g00345 515 MobiDBLite consensus disorder prediction 15 75 - -
Vivi2g00345 515 SUPERFAMILY Retrovirus zinc finger-like domains 484 507 IPR036875 GO:0003676|GO:0008270
Vivi2g00345 515 Gene3D - 60 285 IPR012677 -
Vivi2g00345 515 ProSiteProfiles Zinc finger CCHC-type profile. 491 506 IPR001878 GO:0003676|GO:0008270
Vivi2g00345 515 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00345 Vivi-Chr2 10983572 10987106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00345 297 367 Eukaryotic Initiation Factors Gene Family AT2G23350 31.507 7.71e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00345 - - mtr:25485710 576.244