Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00344 ATGGTTCTATCGAATAAGAAGCTTAAGCAGAAGCTTAGAGCTGAATTAACCCTAAACCAAACCAACACCGAATCGAATCCCTCATCTTCATCTTCCAACTCATTCAAACTTCTTCTAAACTCTTCCACCAACAAACCCATTTTGTCCAAGAGAGAGAAACTCCGAAAGATTCGACCTTTGCAACCACAAACTCAAACCAATGAGGATGAAATTGCGATTGAAGGTTTGGGAAAGAAGAACAATAAGAAGAGGAAGATAAAGGAAGTGAAACAGAATGATGGTGATGATGGTGATGATGTGAGTAATGAGGTTGTTGTTAAGAAGGGGAAACTGAAGGTAGAGAAACAGAATGGTGATGTGAGTAACGAGGTTGTTGTTAAGAAGGGGAAAGTGAAGGTAGAGGAACAGAATGGTGATGAGGTTGTTGTTAAGGTGACGAAACAATCGGTGAAAAAGGAGAAGCAGAAGAAGAAGAATCTGTTGAAGAAGAAGAGGAAGAAGGCCAAAGCTGCAGAGGAAAATGGTAAGGTGAAAACTGGTGAGGAAAATGGTGAGGTCACAGCTGCTGAGGGAAGTGGTTCTAATCATCAAGAGGAGATGTCGGAGCTTACGACAGAGTTGGCTAATACCAATATCAATACCAGTCAAGAAAACAGTGATGCTGTTACAAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGACATTCATAGTTATTTTGAAAGCTGCGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGCAAGTTCAGAGGGATTGCAATAATCGTTTTTAAGACTGAAGCAGCGGCGAAACGAGCATTGGCTCTTGATGGATCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAGCTCAAACAGCCCGATTTACCCCAGAACTGAAGGAGGGATATAATAGAATCTACGTTGGAAGTTTATCATGGGAAATAACAGAGGAAGAACTGAGGAAATTCTTCTCAAATTGCAATATAAAGTCCATACGATTTGGAAAGGACAAGGAAACAGGAGAATTCCGAGGGTATGCTCATGTGGATTTCAGTGATAGTAAGTCACTGAAAACAGCACTTGCATTGGATCAAAGTGTCTTGTTTGGAAGGCCTGTCCGGATAAGTTGCGCAGTTCCTTTGAATAAAAAACCAGGTGCAGGTGAAAAATCAGTCCCAGGCTCGAAACCAAGTGCAGCTGAAAAATCAGTTGCAGGTTCTAAACCTAGTGCGGGTGAAAAATCATTTGCAAGTTCTAAACCAGGTGCGGGTGAAAAGTCATTTGCAAGTTCTAAACCAGGTGCGGCTGAAAAATCAGTTGCAGGTTCTAAACCAGGTGCGGCAGAAAAATCAGTTGCAGGTTCTAAACCAGGTGCGGGTGAAAAATCATTTGCAGGTGAAAAATCATTTGCAGGCGAAAAATCTGTTGCAGTTGAGGAACCAACTGTTGAGAAACCAATTACCGTTGTTGCAAGTGGCAAGAGGAAGAATAGGATGTGCTACGGGTGTCGTCAAAAAGGACATAATCTCTCAGAATGTCCAAACCCACAAATAGCCACTTCTACTACAATCTAA 1608 0.416 MVLSNKKLKQKLRAELTLNQTNTESNPSSSSSNSFKLLLNSSTNKPILSKREKLRKIRPLQPQTQTNEDEIAIEGLGKKNNKKRKIKEVKQNDGDDGDDVSNEVVVKKGKLKVEKQNGDVSNEVVVKKGKVKVEEQNGDEVVVKVTKQSVKKEKQKKKNLLKKKRKKAKAAEENGKVKTGEENGEVTAAEGSGSNHQEEMSELTTELANTNINTSQENSDAVTKVYVGGIPYYSSEDDIHSYFESCGTITEINCMTFPDTGKFRGIAIIVFKTEAAAKRALALDGSDMGGLFLKIQPYKAAQTARFTPELKEGYNRIYVGSLSWEITEEELRKFFSNCNIKSIRFGKDKETGEFRGYAHVDFSDSKSLKTALALDQSVLFGRPVRISCAVPLNKKPGAGEKSVPGSKPSAAEKSVAGSKPSAGEKSFASSKPGAGEKSFASSKPGAAEKSVAGSKPGAAEKSVAGSKPGAGEKSFAGEKSFAGEKSVAVEEPTVEKPITVVASGKRKNRMCYGCRQKGHNLSECPNPQIATSTTI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00344 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 300 IPR000504 GO:0003723
Vivi2g00344 535 MobiDBLite consensus disorder prediction 395 490 - -
Vivi2g00344 535 Coils Coil 143 174 - -
Vivi2g00344 535 SUPERFAMILY RNA-binding domain, RBD 212 302 IPR035979 GO:0003676
Vivi2g00344 535 MobiDBLite consensus disorder prediction 166 180 - -
Vivi2g00344 535 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 384 IPR000504 GO:0003723
Vivi2g00344 535 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 291 IPR000504 GO:0003723
Vivi2g00344 535 ProSiteProfiles Zinc finger CCHC-type profile. 511 526 IPR001878 GO:0003676|GO:0008270
Vivi2g00344 535 MobiDBLite consensus disorder prediction 72 102 - -
Vivi2g00344 535 SUPERFAMILY RNA-binding domain, RBD 308 405 IPR035979 GO:0003676
Vivi2g00344 535 SUPERFAMILY Retrovirus zinc finger-like domains 504 527 IPR036875 GO:0003676|GO:0008270
Vivi2g00344 535 MobiDBLite consensus disorder prediction 16 102 - -
Vivi2g00344 535 MobiDBLite consensus disorder prediction 153 197 - -
Vivi2g00344 535 CDD RRM1_PHIP1 225 296 IPR034361 -
Vivi2g00344 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 391 IPR000504 GO:0003723
Vivi2g00344 535 Gene3D - 57 305 IPR012677 -
Vivi2g00344 535 SMART rrm1_1 224 296 IPR000504 GO:0003723
Vivi2g00344 535 SMART rrm1_1 316 387 IPR000504 GO:0003723
Vivi2g00344 535 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 78 301 - -
Vivi2g00344 535 Gene3D - 307 397 IPR012677 -
Vivi2g00344 535 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00344 Vivi-Chr2 10983572 10987106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00344 317 387 Eukaryotic Initiation Factors Gene Family AT2G23350 31.507 8.76e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00344 - - mtr:25485710 581.637