Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00342 ATGGCAATCTACAGAATAGCAATTGGATCTCCTAGAGAAGCTAGTAATCCTGCTGCCATTAGAGCAGCTTTCGCAGAATTCTTCTCTATGATCATTTTTGTTTTTGCCGGCCAAGGCTCCGGCATGGCTTATAACAAACTTACAAAGAATGGAGGTGCAACTCCTGATGGTCTTATAGTGGCATCATTGTCTCATGCATTTGGGTTGTTTGTGGCTGTTTCTGTTGGTGCAAACATTTCTGGTGGTCATGTCAACCCTGCAGTCACATTTGGTGCTTTCATTGGAGGAAATATTACTTTCTTGAGAAGTATTTTATATTGGATTGCGCAGTTACTTGGTTCTGTTGTTGCTTGCATTCTTCTCAATTCATGCACTGGTGGAATGGAAACATCAGCTTTCGCACTATCCTCAGGTGTGTCAGTATGGAATGCATTGGTTTTTGAGATAGTAATGACATTTGGGTTGGTATATACAGTTTATGCAACAGCAATAGATCCAAAGAAAGGGAATGTTGGTATTGTAGCACCACTAGCAATAGGTTGCATCGTGGGTGCAAATATCTTAGTTGGGGGTGTATTTGATGGTGCATCAATGAATCCAGCAGTGTCGTTTGGGCCTGCTGTGGTTAGTAAAACATGGACTCATCATTGGGTCTATTGGGTTGGCCCATTCATTGGTTCAGCTATTGCTGCTATTCTTTATGATAACATCTTTATTGGTGATGATGCTCATGAACCTCTTTCAAATAGTGACTTTTAG 759 0.4111 MAIYRIAIGSPREASNPAAIRAAFAEFFSMIIFVFAGQGSGMAYNKLTKNGGATPDGLIVASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITFLRSILYWIAQLLGSVVACILLNSCTGGMETSAFALSSGVSVWNALVFEIVMTFGLVYTVYATAIDPKKGNVGIVAPLAIGCIVGANILVGGVFDGASMNPAVSFGPAVVSKTWTHHWVYWVGPFIGSAIAAILYDNIFIGDDAHEPLSNSDF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00342 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g00342 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g00342 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g00342 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g00342 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g00342 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g00342 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Vivi2g00342 252 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Vivi2g00342 252 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g00342 252 FunFam Probable aquaporin TIP1-1 4 251 - -
Vivi2g00342 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi2g00342 252 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Vivi2g00342 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00342 Vivi-Chr2 10947340 10948875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00342 1 252 Major Intrinsic Protein MIP AT4G01470 81.349 3.67e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00342 K09873 - gmx:100818197 452.21