Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00300 ATGGCGTCGACGCCGATTCAACCATACGGCGATTTGGATTCCACTCTGAGGGCCATGGCCGGCCGTGCTGAAGGTTTCGGCCGCCTCGCCATTGGCGGCCTCCACGGTCCTCTCTATCTGGTTACCTCCCTTTCAGATGATGGTCCTGGTTCACTTCGCGAAGGATGTCGTAGAAAGGAGCCGTTATGGATTGTTTTTGAGATTTCGGGTACAATTAACCTTTCATCATACCTGAATGTGTCGTCTCATAAGACAATAGATGGAAGAGGCCAGAGGATTAAATTGACTGGGAAAGGCTTAAGACTGAAAGAATGTGAGAATATAATTATATGCAACCTTGAGTTTGAGGGGGGAAGGGGTCATGATGTAGATGGGATTCAAATAAAACCGAATTCTAGGAATATTTGGATAGACCGTTGTAGTCTTCGAGATTATGATGACGGGCTTATAGACATCACAAGACAAAGCACGGATATCACTATATCTAGATGCTACTTTGCACAGCATGACAAGACCATGTTAATTGGTGCTAACCCGTTGCACGTCGGTGATAGATGTATTCGGGTGACGATTCATCATTGTTTCTTTGATGGAACACGGCAGAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAATAATTACATCAGAAACTGGGAAATCTATGCAATTTGTGCTAGTGTTGAGGCCCAGATATATTCCCAATGCAACATATATGAGGCAGGAACTAAGAAAAAGGCTTTTGAATTTTATACCGAAAAGGCGGAAGACAAAGAACATCAGGAGTCCGGCTTCATAATATCCGAAGGAGACATGCTTCTGAATGGTGCTCAGCCATGCATGCCACCGGAATCTAAAGAAGAAATCATGTTTCATCCTAGCGAATATTACCCAACTTGGACAATGGAAGCAGCTACAGATTCTCTCAGAGAGGTTGTCCAGTTATGTACAGGTTGGCAGTCCGTTTGTAGACCAGTAGACAATATGTTATGA 999 0.4404 MASTPIQPYGDLDSTLRAMAGRAEGFGRLAIGGLHGPLYLVTSLSDDGPGSLREGCRRKEPLWIVFEISGTINLSSYLNVSSHKTIDGRGQRIKLTGKGLRLKECENIIICNLEFEGGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGANPLHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWEIYAICASVEAQIYSQCNIYEAGTKKKAFEFYTEKAEDKEHQESGFIISEGDMLLNGAQPCMPPESKEEIMFHPSEYYPTWTMEAATDSLREVVQLCTGWQSVCRPVDNML 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00300 332 PANTHER PECTATE LYASE 18-RELATED 12 283 IPR045032 GO:0030570
Vivi2g00300 332 Pfam Pectate lyase 77 240 IPR002022 -
Vivi2g00300 332 Gene3D - 9 318 IPR012334 -
Vivi2g00300 332 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Vivi2g00300 332 PRINTS Pollen allergen Amb family signature 224 243 IPR018082 -
Vivi2g00300 332 PRINTS Pollen allergen Amb family signature 202 221 IPR018082 -
Vivi2g00300 332 SMART amb_all 34 247 IPR002022 -
Vivi2g00300 332 SUPERFAMILY Pectin lyase-like 20 324 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00300 Vivi-Chr2 9588310 9590970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00300 46 330 Polysaccharide Lyase AT3G55140 78.246 2.11e-176 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00300 K01728 - gmx:100802068 606.29