Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g00276 | ATGGAATTTGAGACAAGGGAGGGTGTGAAGGCAATTGGAAGTTTCGAGGAGATGATAACAAAAGACGATTTACTTCGCGGGATCTACCAATATGGTTTCGAGAAACCGTCGGCGATTCAACAACGTGCCATTGTGCCTATCATTCAGGGTCGTGACGTCATCGCTCAGGCTCAATCTGGAACCGGAAAGACCTCCATGATTGCCCTAACTGTTTGCCATGTTGTTGACACATCCGTCAATGAGGTGCAGGCTTTAATTGTTTCTCCAACTAGGGAGCTTGCCTCTCAAACTGAAAAGAATATATTGGCTATCGGGGATTACATAAATATACGATCCCATGCTTGCATTGGAGGCAAAAGTATGGGAGAAGACATAAGGAAACTTGAACACGGAGTTCATGTAGTGTCTGGAACTCCTGGTCGAGTATGTGACATGATCAAAAGGAGAACATTGCCCACAAGAGCTATCAAGTTGCTATTTTTGGACGAATCTGATGAAATGCTGAGCAGAGGGTTTAAAGATCAAATTTATGATTTGTACAGATATCTCCCACCTGATCTTCAGGTTGTCTTGATTTCTGCTACTTTACCTCATGATGTACTGGAGATGACAAATAAGTTCATGGATGATCCTGTGAGGGTCCTTGTAAAACGTGACGAGTTGACATTGGAGCGCATCAAGCAATATTTTGTTGAGGTTGAGAGGGAGGAATGGAAGTTTGATACTCTGTGTGATCTTTATGACACACTTACTATATCTCAAGCTGTTATATTCTGCAACACCAAGCAAAAGGTGGACTGGTTATCCAAACAAATGTATAACAATAATTTCACCGTGTCATCAATGCATGGTGACATGCCTCAGAGAGAAAGAGATGCAATAATGAAGGAATTTCGTGCTGGAACAACTCGTTTATTAATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTGTACGGTTATCAATTATGACCTTCCAAATAATCGAGAGTTGTATATTCATAGGATTGGCCGTTCGGGACGTTTTGGACGAAAGGGCGTTGCATTAAATTTTGTCAAAAGTCATGAAGTCACCATCATGAGAGATATTGAACAATACTATAGTACTCAGATTGAGGAACTGCCAATGAATGTTGCTGATGTTTTGTAA | 1161 | 0.4134 | MEFETREGVKAIGSFEEMITKDDLLRGIYQYGFEKPSAIQQRAIVPIIQGRDVIAQAQSGTGKTSMIALTVCHVVDTSVNEVQALIVSPTRELASQTEKNILAIGDYINIRSHACIGGKSMGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLPTRAIKLLFLDESDEMLSRGFKDQIYDLYRYLPPDLQVVLISATLPHDVLEMTNKFMDDPVRVLVKRDELTLERIKQYFVEVEREEWKFDTLCDLYDTLTISQAVIFCNTKQKVDWLSKQMYNNNFTVSSMHGDMPQRERDAIMKEFRAGTTRLLITTDVWARGLDVQQVCTVINYDLPNNRELYIHRIGRSGRFGRKGVALNFVKSHEVTIMRDIEQYYSTQIEELPMNVADVL | 386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g00276 | 386 | Pfam | Helicase conserved C-terminal domain | 239 | 347 | IPR001650 | - | |
| Vivi2g00276 | 386 | Pfam | DEAD/DEAH box helicase | 38 | 201 | IPR011545 | GO:0003676|GO:0005524 | |
| Vivi2g00276 | 386 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 44 | 214 | IPR014001 | - | |
| Vivi2g00276 | 386 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 12 | 369 | - | - | |
| Vivi2g00276 | 386 | FunFam | ATP-dependent RNA helicase DBP5 | 1 | 219 | - | - | |
| Vivi2g00276 | 386 | SMART | helicmild6 | 266 | 347 | IPR001650 | - | |
| Vivi2g00276 | 386 | SMART | ultradead3 | 32 | 229 | IPR014001 | - | |
| Vivi2g00276 | 386 | Gene3D | - | 218 | 386 | IPR027417 | - | |
| Vivi2g00276 | 386 | Gene3D | - | 1 | 217 | IPR027417 | - | |
| Vivi2g00276 | 386 | CDD | SF2_C_DEAD | 226 | 356 | - | - | |
| Vivi2g00276 | 386 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 81 | 369 | IPR027417 | - | |
| Vivi2g00276 | 386 | FunFam | Eukaryotic initiation factor 4A-III | 220 | 386 | - | - | |
| Vivi2g00276 | 386 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 225 | 386 | IPR001650 | - | |
| Vivi2g00276 | 386 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 13 | 41 | IPR014014 | GO:0003724 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi2g00276 | Vivi-Chr2 | 8663461 | 8665372 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi2g00276 | 3 | 386 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 80.208 | 0.0 | 663 |