Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00276 ATGGAATTTGAGACAAGGGAGGGTGTGAAGGCAATTGGAAGTTTCGAGGAGATGATAACAAAAGACGATTTACTTCGCGGGATCTACCAATATGGTTTCGAGAAACCGTCGGCGATTCAACAACGTGCCATTGTGCCTATCATTCAGGGTCGTGACGTCATCGCTCAGGCTCAATCTGGAACCGGAAAGACCTCCATGATTGCCCTAACTGTTTGCCATGTTGTTGACACATCCGTCAATGAGGTGCAGGCTTTAATTGTTTCTCCAACTAGGGAGCTTGCCTCTCAAACTGAAAAGAATATATTGGCTATCGGGGATTACATAAATATACGATCCCATGCTTGCATTGGAGGCAAAAGTATGGGAGAAGACATAAGGAAACTTGAACACGGAGTTCATGTAGTGTCTGGAACTCCTGGTCGAGTATGTGACATGATCAAAAGGAGAACATTGCCCACAAGAGCTATCAAGTTGCTATTTTTGGACGAATCTGATGAAATGCTGAGCAGAGGGTTTAAAGATCAAATTTATGATTTGTACAGATATCTCCCACCTGATCTTCAGGTTGTCTTGATTTCTGCTACTTTACCTCATGATGTACTGGAGATGACAAATAAGTTCATGGATGATCCTGTGAGGGTCCTTGTAAAACGTGACGAGTTGACATTGGAGCGCATCAAGCAATATTTTGTTGAGGTTGAGAGGGAGGAATGGAAGTTTGATACTCTGTGTGATCTTTATGACACACTTACTATATCTCAAGCTGTTATATTCTGCAACACCAAGCAAAAGGTGGACTGGTTATCCAAACAAATGTATAACAATAATTTCACCGTGTCATCAATGCATGGTGACATGCCTCAGAGAGAAAGAGATGCAATAATGAAGGAATTTCGTGCTGGAACAACTCGTTTATTAATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTGTACGGTTATCAATTATGACCTTCCAAATAATCGAGAGTTGTATATTCATAGGATTGGCCGTTCGGGACGTTTTGGACGAAAGGGCGTTGCATTAAATTTTGTCAAAAGTCATGAAGTCACCATCATGAGAGATATTGAACAATACTATAGTACTCAGATTGAGGAACTGCCAATGAATGTTGCTGATGTTTTGTAA 1161 0.4134 MEFETREGVKAIGSFEEMITKDDLLRGIYQYGFEKPSAIQQRAIVPIIQGRDVIAQAQSGTGKTSMIALTVCHVVDTSVNEVQALIVSPTRELASQTEKNILAIGDYINIRSHACIGGKSMGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLPTRAIKLLFLDESDEMLSRGFKDQIYDLYRYLPPDLQVVLISATLPHDVLEMTNKFMDDPVRVLVKRDELTLERIKQYFVEVEREEWKFDTLCDLYDTLTISQAVIFCNTKQKVDWLSKQMYNNNFTVSSMHGDMPQRERDAIMKEFRAGTTRLLITTDVWARGLDVQQVCTVINYDLPNNRELYIHRIGRSGRFGRKGVALNFVKSHEVTIMRDIEQYYSTQIEELPMNVADVL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00276 386 Pfam Helicase conserved C-terminal domain 239 347 IPR001650 -
Vivi2g00276 386 Pfam DEAD/DEAH box helicase 38 201 IPR011545 GO:0003676|GO:0005524
Vivi2g00276 386 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 214 IPR014001 -
Vivi2g00276 386 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 12 369 - -
Vivi2g00276 386 FunFam ATP-dependent RNA helicase DBP5 1 219 - -
Vivi2g00276 386 SMART helicmild6 266 347 IPR001650 -
Vivi2g00276 386 SMART ultradead3 32 229 IPR014001 -
Vivi2g00276 386 Gene3D - 218 386 IPR027417 -
Vivi2g00276 386 Gene3D - 1 217 IPR027417 -
Vivi2g00276 386 CDD SF2_C_DEAD 226 356 - -
Vivi2g00276 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 369 IPR027417 -
Vivi2g00276 386 FunFam Eukaryotic initiation factor 4A-III 220 386 - -
Vivi2g00276 386 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 225 386 IPR001650 -
Vivi2g00276 386 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 13 41 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00276 Vivi-Chr2 8663461 8665372 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00276 3 386 Eukaryotic Initiation Factors Gene Family AT3G19760 80.208 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00276 K13025 - gmx:100795032 681.789