Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00258 ATGCCATTTCGAGCATTTCGCGTTATAACCCTCACTCGTCGCTCGCATCACCGTTTTTCCACTCCCCTTACCTTCTCCTCTCTTCCCCAATTTCAACCCCACAATTTCTTACCATGGTTAGAGAAAAAAGCTAATTCCACTATTTCTTCATCACTCTCCATCGCCAATTCTCCATACGGAAACTCCTTGTTCGCTTCCAACTCAATTCAAACCGGAGATTGCATTTTACAAGTTCCCTACTCTGTACAAATAACTGCTGATAATCTCGCTCCTGAAATCAGAACTTCGATCGGTGAAGATGCAGGAAACATTGCAAAACTTGCCATTGTTCTTCTAATTCACAAGAAGTTGGGTCAGGATTCTGAATGGCATCCTTATATCAGCTGCCTTCCACCACAAGAGGAGATGCATAATACTATATTTTGGAATGAAAGTGAGTTGGACATGATTCGCGGAAGTTCAGTTTATCAGGAAACTATTTATCATAAGTCTCAAATTGAGAAGGACTTCCTGGCAATCAGGCCTGTTCTTAAATCATTTTGTCAAAGTTTTGGAGATTTTACTTGCAAGGACTTCATGCACGCATGTACACTAGTTGGCTCTAGAGCATGGGGAAGCACAAAGGGTTTATCTCTGATTCCATTTGCAGATTTCTTAAATCATGATGGGATTTCAGAAGCCATTGTAATGAGTGATGATGATAAACAATGCTCAGAAGTTACTGCTGATCGCGATTATGTTCCTGGTGAACAGGTACTTATAAGGTATGGAAAGTTTTCAAATGCTACATTGATGCTGGACTTTGGCTTTACAATTCCCTACAACATTTATGACCAGGTTCAGATCCAGTTTGATATACCTAAGCACGATCCCCTGCATGACATGAAATTGGAACTCTTACAACAATACTTTGTGCCTCCGACCAACGATGCAAAGGGTTTGAAGTGTTCAGTGAATTCCTTCACAATCAAGGAGGTGAAGTCTGCTAGAGGAAAAGGGAAGGGAGTGCCACAATCACTTCGCGCATTTGCTCGTATTCTTTCCTGTACCACGCCTCACGAGCTTAACCATCTGGTCATGGAGGCTGCACAAACTGATGGTAGGCTGGCTAGGCGTCCTTTACAGGATATAAACAAAGAGATCCAAGCACACCAGATGTTGTCTTCATTATTCATCCAATTAATTGAAGAGCGCAATACAGCTGTTATGTCATTAGATTCTTGGGGTACATCCTTGTGCGAAAGAAGACTTCCTGTTAGAAGACAAATGGCTCAAAATCTGCTACACGGCGAGCTTCACATTCTCAAATCCGCTTCCATCTGGCTAGAGAACTACTGCTTTTCTTTGTCTTGA 1353 0.4198 MPFRAFRVITLTRRSHHRFSTPLTFSSLPQFQPHNFLPWLEKKANSTISSSLSIANSPYGNSLFASNSIQTGDCILQVPYSVQITADNLAPEIRTSIGEDAGNIAKLAIVLLIHKKLGQDSEWHPYISCLPPQEEMHNTIFWNESELDMIRGSSVYQETIYHKSQIEKDFLAIRPVLKSFCQSFGDFTCKDFMHACTLVGSRAWGSTKGLSLIPFADFLNHDGISEAIVMSDDDKQCSEVTADRDYVPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLHDMKLELLQQYFVPPTNDAKGLKCSVNSFTIKEVKSARGKGKGVPQSLRAFARILSCTTPHELNHLVMEAAQTDGRLARRPLQDINKEIQAHQMLSSLFIQLIEERNTAVMSLDSWGTSLCERRLPVRRQMAQNLLHGELHILKSASIWLENYCFSLS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00258 450 Gene3D set domain protein methyltransferase, domain 1 32 270 - -
Vivi2g00258 450 Gene3D - 273 445 IPR036464 -
Vivi2g00258 450 SUPERFAMILY SET domain 34 275 IPR046341 -
Vivi2g00258 450 FunFam Predicted protein 273 448 - -
Vivi2g00258 450 Pfam Rubisco LSMT substrate-binding 288 435 IPR015353 -
Vivi2g00258 450 Pfam SET domain 62 257 IPR001214 GO:0005515
Vivi2g00258 450 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 30 270 - -
Vivi2g00258 450 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 35 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00258 Vivi-Chr2 7660550 7667578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00258 60 228 NAC Transcription Factor Family AT3G56570 23.429 8.75e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi2g00258 SET 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00258 K19199 - gmx:100818002 635.565