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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vivi2g00243
ATGGCATCAACATCTTGTGTTATGAAGACTCCATTAGCTATGAAAGAGACGGGTTCAAGCTGTGGTCAATATCCTCCTCCTATGGCAACGTATGAAGAGGTTGTAGACAATCCTAAGCTCTTTTTGCATAGCTTGGAGAAGCTCCATGCTACTATGGGCACCAAGTTCATGGTTCCTATTATTGGGGGAAAGGAGTTGGATTTACACCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATTAAAGAGAGAAAATGGAAAGATATAACTTTAGTTTTCAATTTTCCATCAACGGCTACAAATGCTTCTTTTGTGCTGAGGAAGTACTATACTTCATTACTCTACCATTATGAGCAAATCTATTATTTTAAAGCTCATAACTGGACCCATGCAGCTTCTGATGTTTTGCAGAGTCCATCATCCACCCCAGTTTCTGCTCCGAAGATACCGTTTTCGCATCCTTCATCTGAAGCTCAACCAGCTGCCGTTCAGCCGTTAAATGTTAATGCTGCTAGACTGCCTGAAGCAATGGCATCATCTTCGGCAGGGTCTCATGTTGTCGGGGTCATTGATGGGAAATTCGAAAGTGGCTATCTAGTTACTGTCACAATCGGTTCGGAGAAACTCAAGGGTGTACTTTATCAAGCTCCACAAAATGCTGCTGTGTTGCCAGCACCGCCAGCACCCAACCAGAGTGCTTCGGATATTAACAACAACGCTGGTGTCCATCGTCGCCGGCGTAGGAAGAAATCAGAAATGAAAAAGAGAGATCCTGCTCACCCAAAACCAAACAGAAGTGGATACAACTTCTTCTTTGCAGAACAACATGCTAGGCTTAAACCTCTTAACCAAGGGAAGGACCGAGAGATCAGTAGGACCATCGGTGAACTCTGGAACAAGTTAAACGAATCTGAAAAAGCAGTTTATCAAGAACAAGCCATGAAGGACAAAGAGAGGTACAAAACAGAAATGGAGTCTTACCGCGAGAAATTGAAGATGGATCAAGTCATTAGTGATGCGATGCCACTTCAACAGCGACTTCCTGAAGCCGATACGGACATGTTGAATGCTGATATGAAATTTGATGAAGCTGAGGCAGATTCTCTTCAAACACCAGAGGAGAGCAGTTCGGTCGGAAGCGAGTATGAAGATGATAAAGGCATGGAGAAAGATTTTAGTGTGGATGCATTTCCTGTTATAGGAGTTGGAGCTGAGGCTATGGATTCAGTAGAGAAATCATCCAAGGGGGGCTTATGA
1269
0.4374
MASTSCVMKTPLAMKETGSSCGQYPPPMATYEEVVDNPKLFLHSLEKLHATMGTKFMVPIIGGKELDLHRLFVEVTSRGGIEKIIKERKWKDITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKAHNWTHAASDVLQSPSSTPVSAPKIPFSHPSSEAQPAAVQPLNVNAARLPEAMASSSAGSHVVGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNAAVLPAPPAPNQSASDINNNAGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLNQGKDREISRTIGELWNKLNESEKAVYQEQAMKDKERYKTEMESYREKLKMDQVISDAMPLQQRLPEADTDMLNADMKFDEAEADSLQTPEESSSVGSEYEDDKGMEKDFSVDAFPVIGVGAEAMDSVEKSSKGGL
422
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vivi2g00243
422
CDD
HMG-box_AtHMGB9-like
265
331
-
-
Vivi2g00243
422
Coils
Coil
314
334
-
-
Vivi2g00243
422
FunFam
High mobility group B protein 15
247
342
-
-
Vivi2g00243
422
SUPERFAMILY
HMG-box
253
336
IPR036910
-
Vivi2g00243
422
ProSiteProfiles
HMG boxes A and B DNA-binding domains profile.
265
332
IPR009071
-
Vivi2g00243
422
FunFam
High mobility group B protein 15
29
142
-
-
Vivi2g00243
422
Gene3D
-
29
139
IPR036431
GO:0003677
Vivi2g00243
422
Pfam
ARID/BRIGHT DNA binding domain
39
122
IPR001606
GO:0003677
Vivi2g00243
422
SUPERFAMILY
ARID-like
33
132
IPR036431
GO:0003677
Vivi2g00243
422
SMART
ARID_2
32
122
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vivi2g00243
Vivi-Chr2
7330207
7333679
Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vivi2g00243
1
395
ARID Transcription Factor Family
AT1G04880
58.088
1.44e-135
394
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
ARID
Vivi2g00243
ARID
4.6e-18
CL0123
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vivi2g00243
-
-
gmx:100807028
570.852
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