Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00241 ATGGCATCAACATCTTGTGTTATGAAGACTCCATTAGCTATGAAAGAGACGGGTTCAAGCTGTGGTCAATATCCTCCTCCTATGGCAACGTATGAAGAGGTTGTAGACAATCCTAAGCTCTTTTTGCATAGCTTGGAGAAGCTCCATGCTACTATGGGCACCAAGTTCATGGTTCCTATTATTGGGGGAAAGGAGTTGGATTTACACCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATTAAAGAGAGAAAATGGAAAGATATAACTTTAGTTTTCAATTTTCCATCAACGGCTACAAATGCTTCTTTTGTGCTGAGGAAGTACTATACTTCATTACTCTACCATTATGAGCAAATCTATTATTTTAAAGCTCATAACTGGACCCATGCAGCTTCTGATGTTTTGCAGAGTCCATCATCCACCCCAGTTTCTGCTCCGAAGATACCGTTTTCGCATCCTTCATCTGAAGCTCAACCAGCTGCCGTTCAGCCGTTAAATGTTAATGCTGCTAGACTGCCTGAAGCAATGGCATCATCTTCGGCAGGGTCTCATGTTGTCGGGGTCATTGATGGGAAATTCGAAAGTGGCTATCTAGTTACTGTCACAATCGGTTCGGAGAAACTCAAGGGTGTACTTTATCAAGCTCCACAAAATGCTGCTGTGTTGCCAGCACCGCCAGCACCCAACCAGAGTGCTTCGGATATTAACAACAACGCTGGTGTCCATCGTCGCCGGCGTAGGAAGAAATCAGAAATGAAAAAGAGAGATCCTGCTCACCCAAAACCAAACAGAAGTGGATACAACTTCTTCTTTGCAGAACAACATGCTAGGCTTAAACCTCTTAACCAAGGGAAGGACCGAGAGATCAGTAGGACCATCGGTGAACTCTGGAACAAGTTAAACGAATCTGAAAAAGCAGTTTATCAAGAACAAGCCATGAAGGACAAAGAGAGGTACAAAACAGAAATGGAGTCTTACCGCGAGAAATTGAAGATGGATCAAGTCATTAGTGATGCGATGCCACTTCAACAGCGACTTCCTGAAGCCGATACGGACATGTTGAATGCTGATATGAAATTTGATGAAGCTGAGGCAGATTCTCTTCAAACACCAGAGGAGAGCAGTTCGGTCGGAAGCGAGTATGAAGATGATAAAGGCATGGAGAAAGATTTTAGTGTGGATGCATTTCCTGTTATAGGAGTTGGAGCTGAGGCTATGGATTCAGTAGAGAAATCATCCAAGGGGGGCTTATGA 1269 0.4374 MASTSCVMKTPLAMKETGSSCGQYPPPMATYEEVVDNPKLFLHSLEKLHATMGTKFMVPIIGGKELDLHRLFVEVTSRGGIEKIIKERKWKDITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKAHNWTHAASDVLQSPSSTPVSAPKIPFSHPSSEAQPAAVQPLNVNAARLPEAMASSSAGSHVVGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNAAVLPAPPAPNQSASDINNNAGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLNQGKDREISRTIGELWNKLNESEKAVYQEQAMKDKERYKTEMESYREKLKMDQVISDAMPLQQRLPEADTDMLNADMKFDEAEADSLQTPEESSSVGSEYEDDKGMEKDFSVDAFPVIGVGAEAMDSVEKSSKGGL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00241 422 CDD HMG-box_AtHMGB9-like 265 331 - -
Vivi2g00241 422 Coils Coil 314 334 - -
Vivi2g00241 422 FunFam High mobility group B protein 15 247 342 - -
Vivi2g00241 422 SUPERFAMILY HMG-box 253 336 IPR036910 -
Vivi2g00241 422 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Vivi2g00241 422 FunFam High mobility group B protein 15 29 142 - -
Vivi2g00241 422 Gene3D - 29 139 IPR036431 GO:0003677
Vivi2g00241 422 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Vivi2g00241 422 SUPERFAMILY ARID-like 33 132 IPR036431 GO:0003677
Vivi2g00241 422 SMART ARID_2 32 122 - -
Vivi2g00241 422 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Vivi2g00241 422 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Vivi2g00241 422 MobiDBLite consensus disorder prediction 365 391 - -
Vivi2g00241 422 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Vivi2g00241 422 Gene3D High mobility group box domain 249 345 IPR036910 -
Vivi2g00241 422 MobiDBLite consensus disorder prediction 229 271 - -
Vivi2g00241 422 SMART hmgende2 264 333 IPR009071 -
Vivi2g00241 422 SMART bright_3 36 127 IPR001606 GO:0003677
Vivi2g00241 422 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00241 Vivi-Chr2 7330091 7333679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00241 1 395 ARID Transcription Factor Family AT1G04880 58.088 1.44e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi2g00241 ARID 4.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00241 - - gmx:100807028 570.852