Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00239 ATGCCTCAGCTTCGTAGCGGAGTGCGACGTGCTCGTGCAGCGCCGGTAACCGAAAAGGAATCCGAACCACCACCTAAGCCGGCGCCGAGGGGGAGGGGTAGACCCAGAACTAGATTGGCCGCCAAGAAATCTGAGCCGCCGTTGACGACACCGTTATTGATCCCTGAAAGTTTGAAGAAGGCGGTGGTTGAGGAGGAAGGTGTGGGTGTCATGGGTGATGAAAGAGTTGGTGTCAGTGCTAATAAGGATAAGGGTGTTGCTGCTGTTCCAGAAGAAGATGCCAACTCTCCACCTCTTCCAGAAAGGGTTCAAGTAGGAGGATCGCCTCTCTATAAGGTAGAAAGGAAACTTGGTAAAGGTGGATTTGGCCAGGTTTTTGTTGGCCGTCGCGAGCGTGCTAATGCTCCTGGAGCTGTGGAGGTGGCTCTGAAATTTGAACATAGAAACAGTAAAGGTTGCAGCTATGGCCCTCCTTACGAATGGCAAGTATACAACACACTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTCATGGACATTCTTGGTCCAAGTTTGTGGGATGTATGGAATACCTCAGGCCAGTCGATGTCTCCTGAGATGGTCTCATGTATAGCTGTTGAGTCATTATCAATACTTGAGAAGTTGCACGCAAAAGGTTATGTACACGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCCAACACAGCACAGGAGAAGAAATTGTTTCTTGTTGACCTTGGTTTAGCAACAAAATGGAAAGATTCGTCGAGTGGAAAGCATACTGAATATGATCAACGCCCCGACATGTTTAGAGGGACTGTTCGATACGCAAGTGTTCATGCTCATCTAGGAAGAACTGCCAGTAGAAGGGATGATCTTGAATCACTTGCATACACACTAATCTTCCTTCATAGGGGCCGATTGCCATGGCAAGGTTTCCAGGGTGATGGTAAATCCTTCCTCGTTTGCAAAAAGAAAATGGGAACATCTGCTGAGATGTTGTGCTGCTTTTGCCCTGCTCCTTTTAAACTATTTCTCGAGACTGTGGTGAACATGAAGTTTGATGAAGAACCCAACTATTCCAAGCTAATATCCTTGTTTGATGGTATACTCGGACCTAATCCCGCATTACGACCAATTAATACCGAAGGCGCGCAAAAGGTTGGGCAAAAGCGGGGTAGATTAACTGCTGATGCAGATGACGAACAGCCCAAAAAGAAGGTTCGTTCAGGGATTCCTGCTTCCCAATGGATTTCAGTTTACAATGCTAGACAACCAATGAAACAAAGGTATCATTACAATGTGGCTGATGGAAGATTAGCACAGCATATTGAGAGGGGGATTGCAGATGACCTTCTTATCAGTTGTGTATCATGTTGTTCCAATCTATGGGCACTTATCATGGATGCTGGAACTAATTATACCGGACAAGTTTACAAGTTATCACCGTTGTTTCTACACAAGGAATGGATCTTAGAACAATGGGATAAGAACTTCTACATTACTTCTATTGCAGGGGCCAATAATGGAAGCTCTGTTGTGGTGATGTCTAAAGGTACGAGGTATACTCAACAATCGTACAAAGTAAGCGAATCTTTCCCCTACAAGTGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTCACCTCAATGGGTACTGCTGGAAACCGCTGGGGTATTGTTATGTCTCGCAATGCTGGATTCAGTGAACAGGTGGTGGAACTGGATTTCCTCTATCCAAGTGAAGGAATCCATAAACGTTGGGATAATGGTTTTAGGATTACAGCAACTGCGGCCACATTGGATCAATCTGCGCTTATATTAAGTATCCCGAGGAACAGGCCCGGTGATGAAACTCAGGAAACTCTGCGCACATCTCAATTTCCCAGTGCTCATGTAAAGGAAAAATGGGCAAAAAACCTTTATCTTGCCCATTTGTGCTATGGGCGCACAGTATGCTGA 2004 0.4511 MPQLRSGVRRARAAPVTEKESEPPPKPAPRGRGRPRTRLAAKKSEPPLTTPLLIPESLKKAVVEEEGVGVMGDERVGVSANKDKGVAAVPEEDANSPPLPERVQVGGSPLYKVERKLGKGGFGQVFVGRRERANAPGAVEVALKFEHRNSKGCSYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDILGPSLWDVWNTSGQSMSPEMVSCIAVESLSILEKLHAKGYVHGDVKPENFLLGQPNTAQEKKLFLVDLGLATKWKDSSSGKHTEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDGKSFLVCKKKMGTSAEMLCCFCPAPFKLFLETVVNMKFDEEPNYSKLISLFDGILGPNPALRPINTEGAQKVGQKRGRLTADADDEQPKKKVRSGIPASQWISVYNARQPMKQRYHYNVADGRLAQHIERGIADDLLISCVSCCSNLWALIMDAGTNYTGQVYKLSPLFLHKEWILEQWDKNFYITSIAGANNGSSVVVMSKGTRYTQQSYKVSESFPYKWINKKWKEGFHVTSMGTAGNRWGIVMSRNAGFSEQVVELDFLYPSEGIHKRWDNGFRITATAATLDQSALILSIPRNRPGDETQETLRTSQFPSAHVKEKWAKNLYLAHLCYGRTVC 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00239 667 Pfam Protein kinase domain 111 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00239 667 Gene3D Transferase(Phosphotransferase) domain 1 81 428 - -
Vivi2g00239 667 MobiDBLite consensus disorder prediction 1 52 - -
Vivi2g00239 667 CDD STKc_CK1 111 381 - -
Vivi2g00239 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vivi2g00239 667 ProSiteProfiles Protein kinase domain profile. 111 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00239 667 SMART serkin_6 111 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00239 667 MobiDBLite consensus disorder prediction 12 29 - -
Vivi2g00239 667 PANTHER CASEIN KINASE-RELATED 111 629 - -
Vivi2g00239 667 ProSitePatterns Protein kinases ATP-binding region signature. 117 144 IPR017441 GO:0005524
Vivi2g00239 667 FunFam casein kinase 1-like protein HD16 82 423 - -
Vivi2g00239 667 SUPERFAMILY Protein kinase-like (PK-like) 111 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00239 Vivi-Chr2 7272283 7277425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00239 105 339 AGC Kinase Gene Family AT3G08730 22.363 3.10e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vivi2g00239 Pkinase 3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00239 - - vvo:131648961 1309.28