Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00161 ATGGCTGCTGCTGCTGCATTCAATGTTATATCACCGCCTCTAATCTCACGGTCAAATGTAGCAGATACTAGAACCCTAACACTCACAGCACTGAATCCTAACCCTAGAAATATCCCCATTCACCGACCTCTGGGATTGAAATTACGTACCACTAGCATTCTTCCTGCGGCTGCTGCTGCTGCTGCTGCCAGAGTCAAAGTGAGGGCGGCTGCTGGTAATTCAGAGTCAGAAGAAGTAATTGTACAATCAAAAGTGACTCACAAAGTATTCTTTGACATCAGTATTGGAAATCCAGTTGGAAAACTCGTCGGTAAGATTGTCATCGGACTCTTCGGTGACGATGTCCCCCAAACTACCGAGAACTTCCGCGCCCTTTGCACCGGCGAGAAGGGCTTTGGCTACAAGAATTCCACCTTTCATCGCGTCATCAAAGAATTCATGATTCAAGGAGGTGATTTCGACAAAGGAAATGGAACTGGTGGCAAGAGTATATATGGTCGCACTTTCAAAGATGAGAATTTTAAACTCTCTCATACTGGACCCGGAACGGTTAGTATGGCAAATGCAGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACGCAATGGCTTGATCAGAAACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCGCAAGAGACAGATCGTGGTGATCGTCCAAGGAAGAAGGTGGTTATCAGTGACTGTGGTGAGCTTCCAATTGCTTGA 765 0.4562 MAAAAAFNVISPPLISRSNVADTRTLTLTALNPNPRNIPIHRPLGLKLRTTSILPAAAAAAAARVKVRAAAGNSESEEVIVQSKVTHKVFFDISIGNPVGKLVGKIVIGLFGDDVPQTTENFRALCTGEKGFGYKNSTFHRVIKEFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGTVSMANAGPNTNGSQFFICTVKTQWLDQKHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVISDCGELPIA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00161 254 CDD cyclophilin_ABH_like 87 249 - -
Vivi2g00161 254 SUPERFAMILY Cyclophilin-like 81 251 IPR029000 -
Vivi2g00161 254 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 88 251 - -
Vivi2g00161 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Vivi2g00161 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 210 225 IPR002130 GO:0000413|GO:0003755
Vivi2g00161 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 197 IPR002130 GO:0000413|GO:0003755
Vivi2g00161 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Vivi2g00161 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 197 209 IPR002130 GO:0000413|GO:0003755
Vivi2g00161 254 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 103 249 IPR002130 GO:0000413|GO:0003755
Vivi2g00161 254 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 250 IPR002130 GO:0000413|GO:0003755
Vivi2g00161 254 FunFam Peptidyl-prolyl cis-trans isomerase 74 254 - -
Vivi2g00161 254 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 134 151 IPR020892 GO:0003755|GO:0006457
Vivi2g00161 254 Gene3D - 73 254 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00161 Vivi-Chr2 5362458 5363780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00161 104 245 U-box Gene Family AT5G67530 48.252 1.32e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00161 K03768 - gmx:100777088 345.125