Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00156 ATGGGTTGTTTTTCGTGTTTCGATTCAAAGGAAGATGAGAAGCTGAATCCTCAAGAATCATCACACAAGAACGATCATCACGATCATAATCTCCCCTCTGCCGCCTCTGGAGGAGGAGCAGAGAAGGTTCGGTCAACAAGTAATGGAGGAGGAGCATCCAAAAGGGATTTTCCTTCTCTTCTCAAAGACGGGCCACCCGGTCAAATTGCTGCTCAAACCTTTACTTTCCGTGAACTCGCCCTTGCAACTAAAAACTTCAGGCCTCAATCCTTTTTAGGGGAAGGTGGTTTCGGAAGGGTCTACAAGGGACGACTCGAATCCACTTCTCAGGCTGTTGCTGTTAAACAGTTAGACAAAGATGGTCTCCAGGGTAATCGCGAGTTCCTTGTGGAAGTTCTCATGCTCAGTCTTCTACACCACCCCAACCTTGTCAGTCTCATTGGTTATTGCGCCGATGGGGACCAACGCCTATTAGTTTATGAATTTATGCCCCTCGGATCATTGGAAGATCACCTTCACGATCTCCCCCCTGATAAGGAGCCTTTAGATTGGAACACTAGAATGAAAATAGCCGCTGGTGCCGCAAAAGGATTGGAATACCTACATGACAAGGCAAATCCTCCAGTAATTTATAGGGACTTCAAGTCATCTAATATTTTACTTGAGGAAGGTTATCATCCAAAGCTTTCTGACTTTGGTCTGGCAAAGCTTGGTCCTGTTGGGGACAAATCACATGTTTCCACTCGTGTCATGGGTACTTATGGTTACTGTGCTCCCGAGTATGCTATGACTGGACAGCTGACTGTAAAATCTGACGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTGATTACTGGCCGTAAAGCCATAGACAGCACCCGGCCCCATGGAGAACAAAACCTCGTCACATGGGCACGGCCTTTATTCAATGACCGTAGGAAGTTTCCAAAGCTGGCAGATCCACGGTTGCAGGGACGGTATCCCATGCGGGGTCTTTATCAAGCTCTAGCTGTAGCATCGATGTGCATCCAAGAACAGGCAGCTGCACGTCCTCTGATTGGGGATGTGGTGACAGCCCTTTCTTATCTAGCCAACCAGGCATATGATACTAACAATCCTGGAATTGGTAATAATAAGGGAACTGGAAATAGAGATGATAAAGGTGGAAGAATATTAAAAAATGATGAAGGTGAAGGATCCGGGCGTAGATGGGATTTGGAGGGATCTGAGAAAGATGACTCCCCACGTGAAACTGCTAAGATGTTAAACCGGGATCTTGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGAGATAAAAGACGACAGAGTGTGCAAGGCAGTTTTGATGCTTCTAATGCCTAG 1380 0.4652 MGCFSCFDSKEDEKLNPQESSHKNDHHDHNLPSAASGGGAEKVRSTSNGGGASKRDFPSLLKDGPPGQIAAQTFTFRELALATKNFRPQSFLGEGGFGRVYKGRLESTSQAVAVKQLDKDGLQGNREFLVEVLMLSLLHHPNLVSLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPRLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANQAYDTNNPGIGNNKGTGNRDDKGGRILKNDEGEGSGRRWDLEGSEKDDSPRETAKMLNRDLDRERAVAEAKMWGENLRDKRRQSVQGSFDASNA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00156 459 CDD STKc_IRAK 92 360 - -
Vivi2g00156 459 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Vivi2g00156 459 Gene3D Transferase(Phosphotransferase) domain 1 163 379 - -
Vivi2g00156 459 MobiDBLite consensus disorder prediction 383 427 - -
Vivi2g00156 459 MobiDBLite consensus disorder prediction 7 30 - -
Vivi2g00156 459 MobiDBLite consensus disorder prediction 368 427 - -
Vivi2g00156 459 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Vivi2g00156 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vivi2g00156 459 Pfam Protein kinase domain 89 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00156 459 Gene3D Phosphorylase Kinase; domain 1 70 162 - -
Vivi2g00156 459 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00156 459 PANTHER OS07G0668900 PROTEIN 3 372 - -
Vivi2g00156 459 SUPERFAMILY Protein kinase-like (PK-like) 71 358 IPR011009 -
Vivi2g00156 459 FunFam Serine/threonine-protein kinase PBS1 60 162 - -
Vivi2g00156 459 MobiDBLite consensus disorder prediction 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00156 Vivi-Chr2 5333267 5337075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00156 1 447 Glycoside Hydrolase AT3G07070 55.705 6.70e-166 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vivi2g00156 Pkinase 7.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00156 K13430 - gmx:100777987 768.459