Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00142 ATGGCTGCTGCTGCTGCATTCAATGTTATATCACCCCCACTCTTCTCACTGTCAAATGTTGCAGATACTAGAACCCTAGCAGTCACAGCACTCAACCCTAACCCTAGAAATATCCCCATTCACCGACCTCTGGGATTGAAATTACGTACCACTAGCATTCTTCCTGCGTCTGCTGCTGCTGCCAGACTCAAAGTGAGGGCGGCTGCTGGTAATTCCGACTCAGAGGAAGTTATCGTACAATCAAAAGTGACTCACAAAGTATTCTTTGACATCAGTATTGGAAATCCAGTTGGAAAACTCGTCGGTAAGATTGTCATCGGACTCTTCGGCGACGATGTCCCCCAGACAACCGAGAACTTCCGTGCCCTTTGCACCGGCGAGAAGGGCTTTGGCTACAAGAATTCCACCTTTCATCGCGTCATCAAAGAATTCATGATTCAAGGAGGAGATTTCGACAAAGGAAATGGAACCGGTGGCAAGAGTATATATGGTCGCACATTCAAAGATGAGAATTTTAAACTCTCTCATACTGGACCCGGAACGGTTAGTATGGCAAATGCAGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACGCAATGGCTTGATCAGAAACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCGCAAGAGACAGATCGTGGTGATCGTCCAAGGAAGAAGGTGGTTATCAGTGACTGTGGTGAGCTTCCAATTGCTTGA 759 0.4625 MAAAAAFNVISPPLFSLSNVADTRTLAVTALNPNPRNIPIHRPLGLKLRTTSILPASAAAARLKVRAAAGNSDSEEVIVQSKVTHKVFFDISIGNPVGKLVGKIVIGLFGDDVPQTTENFRALCTGEKGFGYKNSTFHRVIKEFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGTVSMANAGPNTNGSQFFICTVKTQWLDQKHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVISDCGELPIA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00142 252 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 132 149 IPR020892 GO:0003755|GO:0006457
Vivi2g00142 252 CDD cyclophilin_ABH_like 85 247 - -
Vivi2g00142 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 123 IPR002130 GO:0000413|GO:0003755
Vivi2g00142 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 195 207 IPR002130 GO:0000413|GO:0003755
Vivi2g00142 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 137 149 IPR002130 GO:0000413|GO:0003755
Vivi2g00142 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 208 223 IPR002130 GO:0000413|GO:0003755
Vivi2g00142 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 195 IPR002130 GO:0000413|GO:0003755
Vivi2g00142 252 Gene3D - 71 252 IPR029000 -
Vivi2g00142 252 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 86 249 - -
Vivi2g00142 252 SUPERFAMILY Cyclophilin-like 79 249 IPR029000 -
Vivi2g00142 252 FunFam Peptidyl-prolyl cis-trans isomerase 72 252 - -
Vivi2g00142 252 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 248 IPR002130 GO:0000413|GO:0003755
Vivi2g00142 252 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 247 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00142 Vivi-Chr2 5152896 5154205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00142 102 243 U-box Gene Family AT5G67530 48.252 1.48e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00142 K03768 - gmx:100777088 348.591