Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00113 ATGTCTAGACCACCTATCCTGATTTCCGAATTGAAACCCGATCAAAATGTGTGGAAGATAGCAATTCGTGTTGTCGATATATGGGACGTAAAGGAACGCAATGGTCAGCAGCACATTGAGGCCATACTTCAAGATGCAGAGGGTAATCAGATCCAAGTTGTAACCCGCTCTCGTGACTTTGAGATTTGGAAAAAGACATTGAAGGAAATGGAAACCTATATAGTCTATAATGGTGAAACAATGATCAATAAAATGCCGTGTAAAGTTTGTGATAACAAATACAAGGTGTTCTTTAATCGTGCAACAACTGTCACTGCGGTTGACATACCGAACATTCCAACACATAGCTTTAACTTCAAGCCATTTTCTGACTTCTTAAATGGAGAGTTCTGTGTTGATCGCGTTTACGATATAATAGGTGCTGTCCAACATGTTGTTAGGACCCAAGTTGCAGGTGCTGGGAAAAAAGCTTGTGTGAACCTCACTTTGTCAGACGAAGGTGGGACTGAGATAGATGTTACTCTATGGGAAGGCTATGCTAACCAATTTATGAATTATGCGGCTGAAAGTGGACATCTGATTCTCATTCTCACTCATGCAATGTGTCGGTTGAGCTCATTAAATGGGAAGCTTAACATTTCCAATGCTTGGAGTGGATCTAAACTGCTACTCAATCATGATCATCCACAAGTTGAGGAATTTAAAACAAAATTTCTCGATGTTAATCCACAACAAACTGCTACCCAGTCATTTTCTCTGAATTCATGTTCACAAGGAGCAATTGACGACAGGGCTTTTTCATTCACCAAGGATGTCATAAGCATTGCTGACATGAGCTCTCTTACTGAGGATACCTTCTGCAATACTGTTGGGAAGACATTGCGTTTCAGAGCGAATCCTTTCGACTGGTTTTATGAGTTGTGTCCAACATGTAACAAAACAAATCAATCTCCCGGTAAACCATTCCGGTGCAACTGCTCTGAGAATGTCTCAGCTCCAATCACTAAGTTCAAAATTGAGATCGAGGTGGAACATCGCTCGAAGACCGTTAATTTTGTCTTTTGGGACAAGGAATGCATCCCTTATGTGGGGATGTCTGCCCATTCCTTGAGACAGCTCATGAAAAAGACCAACGAGGATCATCCTTTGATTTATCTCGAACACCTGGACCATTTGTTGGGAAAAGAATTTGCTTTTCGTGCTAAGTACCAGCCGTATTACAAGCAAGCATCTATTGTAAGACTAACTCAAGATGAGGAGGTGAGGCGACTGATAGAAGAAGTCATTACACCTGCTCAGGCCCTTCTTACCATTGCCCCTAAGGAAGAATGTCTTAAGGGAAAGGCTGTCCTCTTCCTTGAGGAAACTAAAGTTGTCAACACACCAACTGTGGATTCTCATTCCAAAGCTGCTACATCTGGAGCACAAAATTGGAGCCCTGATGGCAGCATTGAGATCACCCCATCAAAGAGGGAAAGTCCAACTGATCCCATCCAAAATCAACATGGTCCAGATGTTCTAACACCAAAAATGTATGCAACAAAAGCAAACAGGGCCAAATCTGGAAGGAACACCAAGATGAAGTTAACTTAG 1593 0.4193 MSRPPILISELKPDQNVWKIAIRVVDIWDVKERNGQQHIEAILQDAEGNQIQVVTRSRDFEIWKKTLKEMETYIVYNGETMINKMPCKVCDNKYKVFFNRATTVTAVDIPNIPTHSFNFKPFSDFLNGEFCVDRVYDIIGAVQHVVRTQVAGAGKKACVNLTLSDEGGTEIDVTLWEGYANQFMNYAAESGHLILILTHAMCRLSSLNGKLNISNAWSGSKLLLNHDHPQVEEFKTKFLDVNPQQTATQSFSLNSCSQGAIDDRAFSFTKDVISIADMSSLTEDTFCNTVGKTLRFRANPFDWFYELCPTCNKTNQSPGKPFRCNCSENVSAPITKFKIEIEVEHRSKTVNFVFWDKECIPYVGMSAHSLRQLMKKTNEDHPLIYLEHLDHLLGKEFAFRAKYQPYYKQASIVRLTQDEEVRRLIEEVITPAQALLTIAPKEECLKGKAVLFLEETKVVNTPTVDSHSKAATSGAQNWSPDGSIEITPSKRESPTDPIQNQHGPDVLTPKMYATKANRAKSGRNTKMKLT 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00113 530 Gene3D - 259 429 IPR012340 -
Vivi2g00113 530 Gene3D - 110 250 IPR012340 -
Vivi2g00113 530 Gene3D - 4 108 IPR012340 -
Vivi2g00113 530 SUPERFAMILY Nucleic acid-binding proteins 283 405 IPR012340 -
Vivi2g00113 530 MobiDBLite consensus disorder prediction 463 530 - -
Vivi2g00113 530 SUPERFAMILY Nucleic acid-binding proteins 6 107 IPR012340 -
Vivi2g00113 530 PANTHER OS03G0429900 PROTEIN 6 384 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi2g00113 530 MobiDBLite consensus disorder prediction 463 502 - -
Vivi2g00113 530 CDD RPA1_DBD_B_like 137 236 - -
Vivi2g00113 530 SUPERFAMILY Nucleic acid-binding proteins 116 236 IPR012340 -
Vivi2g00113 530 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00113 Vivi-Chr2 4484507 4491919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00113 6 260 Core DNA Replication Machinery Family AT2G06510 24.354 1.74e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00113 - - vvo:131645782 1083.55