Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00100 ATGTATCGTCCTCCTTCTTCTTCTGGTTCCACTTCTTCCTCCTCTTCTCAACAACAGCAGAGTTCCATAAGTCAGACAGGTCTTACCAGATATGGTTCTGCACCCGGCTCTCTCCTCACCAGCACCGTTGATGCTGTCTTAGCAGGATCACGCCTTCTCCCAGGGACTGGACATTATTTCTCCGGTGATTCCAGCCAGCAGCAACAACAACAGCAACAACAGCAACAGCAACAGCAACTGCAGCAGAGATCTTCTTACGAAGGCTTTGACGGATCATCTCTGGTCCGTCAAAAAAGCTCTCCCGCCGGTTTCCTCAACCATCTCGCCACTCTCAATCACAATAACAGCGCTGGGTTCACAATCACGAGAGGCGGAAATGGAGGATCAAGATTGAAGTCTGAATTGAGCTTTACCGGAGGAGGACAAGGACAGGAATGTCTTTCTAGAATATCCGAAAATGGTGTTGATTATGCAGCAGTAGCTGCAGGAAATGGATCATTGCATAGTAGTAACTGGGGTGTAGGACCTGATAATAATAATAATACTAATAACAATAACAATTCAAATTCTATAGTATTTTCTTCTGGTTCTCAAAATCAAACTAATAATAAGCGTTCTAGTAGAAACGAGGACGATCCCGACCTTCTTCTTCATTGCCTCAACGCCCTTGAAACTCAGTATAGTCTCCCACAAACTTCTATGGAGATGGACAAGCTGATGCATATTCCACAAGATTCCGTCCCTTGTAAAATCCGCGCTAAGCGTGGCTGTGCCACGCATCCCCGAAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGAAAATTGAAGAAATTGCAGGATCTTGTGCCTAATATGGATAAGCAAACAAGTTATTCAGACATGCTAGATTTGGCAGTTCAACATATCAAAGGTCTTCAAACTCAAGTCCAGAAACTTCACGAAGATCTTGAGAGTTGCACTTGCGGATGCAAACAAAGTACATAA 990 0.4424 MYRPPSSSGSTSSSSSQQQQSSISQTGLTRYGSAPGSLLTSTVDAVLAGSRLLPGTGHYFSGDSSQQQQQQQQQQQQQQLQQRSSYEGFDGSSLVRQKSSPAGFLNHLATLNHNNSAGFTITRGGNGGSRLKSELSFTGGGQGQECLSRISENGVDYAAVAAGNGSLHSSNWGVGPDNNNNTNNNNNSNSIVFSSGSQNQTNNKRSSRNEDDPDLLLHCLNALETQYSLPQTSMEMDKLMHIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLESCTCGCKQST 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00100 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 323 IPR036638 GO:0046983
Vivi2g00100 329 CDD bHLH_AtbHLH_like 262 314 IPR045239 -
Vivi2g00100 329 MobiDBLite consensus disorder prediction 54 76 - -
Vivi2g00100 329 Gene3D - 258 327 IPR036638 GO:0046983
Vivi2g00100 329 SMART finulus 263 313 IPR011598 GO:0046983
Vivi2g00100 329 MobiDBLite consensus disorder prediction 59 76 - -
Vivi2g00100 329 MobiDBLite consensus disorder prediction 171 204 - -
Vivi2g00100 329 Pfam Helix-loop-helix DNA-binding domain 262 308 IPR011598 GO:0046983
Vivi2g00100 329 MobiDBLite consensus disorder prediction 171 212 - -
Vivi2g00100 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 307 IPR011598 GO:0046983
Vivi2g00100 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 323 - -
Vivi2g00100 329 MobiDBLite consensus disorder prediction 1 35 - -
Vivi2g00100 329 FunFam Transcription factor bHLH130 family 258 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00100 Vivi-Chr2 3881404 3883630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00100 27 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 43.646 5.32e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g00100 HLH 9.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00100 - - mtr:11440758 464.536