Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00084 ATGTATCGTCCTCCTTCTTCTTCTGGTTCCACTTCTTCCTCCTCTTCTCAACAACAGCAGAGTTCCATAAGTCAGACAGGTCTTACCAGATACGGTTCTGCACCCGGCTCTCTCCTCACCAGCACCGTTGATGCCGTTCTAGCAGGATCACGCCTTCTCCCCGGGACTGGACATTATTTCTCCGGTGATTCCAGCCACCAGCAGCAGCAACAACAGCAACAACAGCAGCAGCAACAGCAACAACAGCAGAGATCTTCTTACGAAGGCTTTGACGGATCATCTCTGGTCCGTCAAAAAAGCTCTCCCGCCGGTTTCCTCAACCATCTCGCCACTCTCAATCACAATAACAGCGCGGGGTTCACAATCACGAGAGGCGGAAATGGAGGATCGAGATTGAAGTCTGAATTGAGCTTTACTGGAGGAGGACAAGGACAGGAATGTCTTTCTAGAATATCTGAAAATGGTGTTGATTATGCAGCAGTAGCTGCAGGAAATGGATCATTGCATAGTAGTAACTGGGGTGTAGGACCTGATAATAATAATAATACTAATAACAATAACAATTCAAATTCTATAGTATTTTCTTCTGGTTCTCAAAATCAAACTAATAATAAGCGTTCGAGTAGAAACGAGGACGATCCCGACCTTCTTCTTCATTGCCTCAATGCCCTTGAAACTCAGTATAGTCTTCCACAAACTTCTATGGAAATGGACAAGCTGATGCATATTCCTCAAGATTCCGTTCCTTGTAAAATCCGCGCTAAGCGTGGCTGTGCCACGCATCCCCGAAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGAAAATTGAAGAAATTGCAGGATCTTGTGCCTAATATGGATAAGCAAACAAGTTATTCAGACATGCTAGATTTGGCAGTTCAACATATCAAAGGTCTTCAAACTCAAGTCCAGAAACTTCACGAAGATCTTGAGAGTTGCACTTGCGGATGCAAACAAAGTACATAA 993 0.4441 MYRPPSSSGSTSSSSSQQQQSSISQTGLTRYGSAPGSLLTSTVDAVLAGSRLLPGTGHYFSGDSSHQQQQQQQQQQQQQQQQQRSSYEGFDGSSLVRQKSSPAGFLNHLATLNHNNSAGFTITRGGNGGSRLKSELSFTGGGQGQECLSRISENGVDYAAVAAGNGSLHSSNWGVGPDNNNNTNNNNNSNSIVFSSGSQNQTNNKRSSRNEDDPDLLLHCLNALETQYSLPQTSMEMDKLMHIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLESCTCGCKQST 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00084 330 MobiDBLite consensus disorder prediction 60 98 - -
Vivi2g00084 330 MobiDBLite consensus disorder prediction 54 98 - -
Vivi2g00084 330 Gene3D - 259 328 IPR036638 GO:0046983
Vivi2g00084 330 MobiDBLite consensus disorder prediction 172 205 - -
Vivi2g00084 330 FunFam Transcription factor bHLH130 family 259 328 - -
Vivi2g00084 330 MobiDBLite consensus disorder prediction 172 213 - -
Vivi2g00084 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Vivi2g00084 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 324 IPR036638 GO:0046983
Vivi2g00084 330 Pfam Helix-loop-helix DNA-binding domain 263 309 IPR011598 GO:0046983
Vivi2g00084 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 324 - -
Vivi2g00084 330 CDD bHLH_AtbHLH_like 263 315 IPR045239 -
Vivi2g00084 330 SMART finulus 264 314 IPR011598 GO:0046983
Vivi2g00084 330 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00084 Vivi-Chr2 3512039 3514164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00084 27 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 44.199 2.86e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g00084 HLH 9.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00084 - - mtr:11440758 460.685