Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00080 ATGAATTTTAAGAAAAAATTATCTTCTCCTATTTCTCCTCCTCCTCTCGAATCTCCAGGCGAGGATATTGATAGGATGATGAGATGTTTTTATGTCCCCAACCCATTCAAAAGGAAATGCACCAATTTGTTATCCAATAACAATTATTCATCTTCCACAGCTACCAACACTTTCACTAGCCATGCACCTGGAATCATGAAAGCAATGCAGATGCTTGAAGTTCAATTTGGAAGTTCACATGCATCCTCAAGTAATAATAATATTGAAGATGTCAGCAACGTTAACAACATGACGATGAATGCATCTACAGATTTTTATCATCCCGGTCATCAGGGACATTTGTCGTTTCATTCACAAGGATTGTTATCACAAACAATAAACTTTGATGCTGCTCATGGTGATGATATTAGAGTTGGTAACAAAATAAATTGGAAAAGGAAGAAGAGTAATGAAAATTTTGATGATGGTAGAATCCACAGTCTACCATTCAAGAAATATGGACCATACACATGTCCAAAGTGCTACGAAGTATTCAATACATCCCAAAAATTTGCTAGTCATGTGATGTCAAGTCACTATAAGTTCGAAAGTGAAGAGGAAAAAAAGAAGAGATACATATCTAAGATTAAAAAGAGATGA 639 0.3521 MNFKKKLSSPISPPPLESPGEDIDRMMRCFYVPNPFKRKCTNLLSNNNYSSSTATNTFTSHAPGIMKAMQMLEVQFGSSHASSSNNNIEDVSNVNNMTMNASTDFYHPGHQGHLSFHSQGLLSQTINFDAAHGDDIRVGNKINWKRKKSNENFDDGRIHSLPFKKYGPYTCPKCYEVFNTSQKFASHVMSSHYKFESEEEKKKRYISKIKKR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00080 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 197 IPR013087 -
Vivi2g00080 212 ProSitePatterns Zinc finger C2H2 type domain signature. 171 192 IPR013087 -
Vivi2g00080 212 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00080 Vivi-Chr2 3414406 3415044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00080 121 212 C2H2 Transcription Factor Family AT2G15740 53.261 6.33e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g00080 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00080 - - vvo:131648476 370.548