Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00078 ATGGATCGCAAAAGAGGAAGATCCGAAGCTTCCTTCAATGGCAATGGCGCCGGAAAACGAGGAAGATCCGAAATGGAGTCCTTTCAATCTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGATGTCCTTTTGGTGAGGGTTGTCATTTCTTGCATTACGTTCCTGGAGGCTTTAAAGCTGTCTCTCAGATGATCAATGTTGGTAGCAGTCCTGCTATTCCACCCGTTGGTAGAAATCCAAATGTTCCGCCATCCTTCCCGGACGGGTCTTCTCCACCGGTTGTTAAGACCCGATTGTGCACCAAGTTCAATAGTGCTGAAGGTTGCAAATTTGGTGATAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCCGCGGTCCCTACATACGAAGATACTCGTCCCATGGGACAAATGCAGAGCAGCAGGGCTGGTGGGAGATTCGAGCCTCCACCTCCAGCTCATGTAGCTGCTGCCGGCTTTGGAGCCTCGGCCACTGCAAAAATTAGTATCAATGCTTCCCTTGCTGGAGCTGTCATTGGAAAAAATGGTGTAAATTCCAAGCAAATCTGTCGCATAACAGGAGCTAAACTTTCTATTAGGGATCATGAAGATCCTAACCTTAGAAATATTGAACTCGAGGGGAATTTTGATCAGATCAAACAAGCTAGTGCCATGGTTCATGACCTTATTCTAAACGTGAGTTCGGTCTCCGGACCTCCGAGAAAAAACACCACTTCAAATTCTTCTGCTCCTGCAAACAACTTCAAGACCAAGCTGTGTGAAAATTTCACCAAAGGATCCTGCACTTTTGGGGAAAAGTGTCATTTTGCACATGGAACAGATGAATTACGCAAGTCTGTAATGTGA 894 0.4653 MDRKRGRSEASFNGNGAGKRGRSEMESFQSGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMINVGSSPAIPPVGRNPNVPPSFPDGSSPPVVKTRLCTKFNSAEGCKFGDKCHFAHGEWELGRPAVPTYEDTRPMGQMQSSRAGGRFEPPPPAHVAAAGFGASATAKISINASLAGAVIGKNGVNSKQICRITGAKLSIRDHEDPNLRNIELEGNFDQIKQASAMVHDLILNVSSVSGPPRKNTTSNSSAPANNFKTKLCENFTKGSCTFGEKCHFAHGTDELRKSVM 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00078 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Vivi2g00078 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
Vivi2g00078 297 PANTHER CCCH ZINC FINGER/TIS11-RELATED 9 137 IPR045877 GO:0003729
Vivi2g00078 297 ProSiteProfiles Type-1 KH domain profile. 172 235 - -
Vivi2g00078 297 CDD KH-I_AtC3H36_like 175 239 - -
Vivi2g00078 297 Gene3D K Homology domain, type 1 166 259 IPR036612 GO:0003723
Vivi2g00078 297 Pfam KH domain 175 236 IPR004088 GO:0003723
Vivi2g00078 297 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Vivi2g00078 297 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Vivi2g00078 297 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Vivi2g00078 297 Gene3D - 260 295 - -
Vivi2g00078 297 Gene3D - 95 132 - -
Vivi2g00078 297 MobiDBLite consensus disorder prediction 1 36 - -
Vivi2g00078 297 SUPERFAMILY CCCH zinc finger 263 293 IPR036855 GO:0046872
Vivi2g00078 297 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Vivi2g00078 297 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Vivi2g00078 297 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Vivi2g00078 297 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Vivi2g00078 297 FunFam Zinc finger CCCH domain-containing protein 95 132 - -
Vivi2g00078 297 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Vivi2g00078 297 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Vivi2g00078 297 FunFam Zinc finger CCCH domain-containing protein 258 294 - -
Vivi2g00078 297 SMART kh_6 171 240 IPR004087 GO:0003676
Vivi2g00078 297 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 169 242 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00078 Vivi-Chr2 3348178 3352164 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi2g00078 KH_1 2.4e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00078 - - gmx:100792652 503.056