Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00074 ATGATTTCAAATTCTGAGATAAATAATTTAAGCTATGAAACTTCACATTCACATGCAAAACGTGCAAGGTATGAAGAAGAAGATGTAGGGTTTCAAAAATTCAAAGGTGTTGTGCCACAACAAAACGGTCATTGGGGTGCACAGATCTATGCAAATCATCAAAGAATATGGTTAGGAACATTCAAATCTGAAAAAGATGCTGCCATGGCTTATGACAGCGCCACCGTCAAGCTCCGAAGTGGAGAAAGCCACCGGAACTTTCCATGGAATGACCAAACGGTTCAAGAGCCTTTGTTTCAGAGTCATTATAGCATGGAAAAGGTTCTCAGCATGATTCGAAACGGAACGTATCAAACAAAGTTTTCTACCTTTCTTCGGAATCAAAGCCAGCGCGGTAAAGAATGTATTGTTGGGGTGAAGAATGAGGAACAGTTTTCATGCATGCAGATTTTTCAGAAGGAATTAACACCTAGTGATGTTGGTAAACTCAACAGGCTTGTCATTCCTAAAAAACACGCGGTTACGTATCTGCCTTTGATCGGTGGCAACAACAATAATAATAATATAACTAATGTTGTTGATGATGATAAGTTTAATGATGAAGAGGTTGTGTTTTATGACAAGCTCATGAGATTGTGGAAGTTTAGATACTGTTATTGGAAGAGTAGCCAAAGCTATGTATTCACTAGAGGGTGGAATCGGTTTGTGAAGGATAAGAAACTCAAGGCCAAAGACACCATTGTGTTTTATGTGTGTGAGCCTATAAATTCAACAAAAGAAGGAAATGGACATGTGTTTTCAATGATAGATGTAATGTATAACAATGTTGATGATAGAAAAAAACATTACTTTGAAGATGAGAATGGAGGAGGCTTCAAGCTCTTTGGTGTAAATATTAACTAA 903 0.3743 MISNSEINNLSYETSHSHAKRARYEEEDVGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDSATVKLRSGESHRNFPWNDQTVQEPLFQSHYSMEKVLSMIRNGTYQTKFSTFLRNQSQRGKECIVGVKNEEQFSCMQIFQKELTPSDVGKLNRLVIPKKHAVTYLPLIGGNNNNNNITNVVDDDKFNDEEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYVCEPINSTKEGNGHVFSMIDVMYNNVDDRKKHYFEDENGGGFKLFGVNIN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00074 300 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Vivi2g00074 300 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 299 IPR044800 GO:0003700
Vivi2g00074 300 Gene3D - 147 280 IPR015300 -
Vivi2g00074 300 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Vivi2g00074 300 FunFam AP2 domain-containing protein RAP2.8 32 89 - -
Vivi2g00074 300 SMART rav1_2 33 94 IPR001471 GO:0003700|GO:0006355
Vivi2g00074 300 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Vivi2g00074 300 Gene3D AP2/ERF domain 32 89 IPR036955 GO:0003700|GO:0006355
Vivi2g00074 300 CDD B3_DNA 150 250 IPR003340 GO:0003677
Vivi2g00074 300 ProSiteProfiles AP2/ERF domain profile. 33 88 IPR001471 GO:0003700|GO:0006355
Vivi2g00074 300 SUPERFAMILY DNA-binding pseudobarrel domain 149 253 IPR015300 -
Vivi2g00074 300 SMART B3_2 151 259 IPR003340 GO:0003677
Vivi2g00074 300 ProSiteProfiles B3 DNA-binding domain profile. 151 272 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00074 Vivi-Chr2 3248666 3249667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00074 33 299 RAV Transcription Factor Family AT1G51120 53.055 5.97e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi2g00074 B3 1.4e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00074 K09287 - gmx:102660503 353.214