Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00052 ATGGACCACCGCTCCCACTTTCACCATCGCCATTCGGCGCATGCTCCTCATCCTCCCCCTGATTACTTTGTTCGCGTTGGAAACTCTAACAAAGACGATTTATATTTGAGGAAGAGAACAAGGATGCGTCGTTGGCTATGCTGCACTTGTCAGGTGGAAGAGTCTTATCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGGGTTATGGAGATGGCAACACAAAAGGTTCGAGAGTGTCAGCTCCTCTCAAACCTGAAGTACAAAAGGCACCACCACCTATCGAAGTTCCAGCATTATCCTTAGATGAGCTGAAGGAAAAAACGGACAACTTTGGTTCAAAGGCTTTGATTGGTGAAGGGTCGTATGGGAGGGTGTATTATGCAACATTAAATGACGGAAGCGCCGTGGCTGTGAAAAAGCTTGATGTTTCTACTGAACCTGAATCAAATAACGAGTTTTTAACCCAGGTTTCCATGGTCTCAAGATTGAAGAATGAAAATTTTGTTGAATTGCATGGATACTGTGTTGAAGGGAATCTTCGTGTACTTGCATATGAATTTGCTACTATGGGCTCTCTTCATGACATTTTGCACGGTAGAAAGGGAGTTCAAGGGGCACAACCTGGGCCAACACTTAACTGGATGCAGCGAGTTAGAATTGCGGTTGATGCAGCAAGGGGATTAGAATATTTACATGAGAAAGTTCAACCATCAATTATACATAGGGATATTAGGTCAAGCAATGTGCTTATCTTTGAAGACTACAGAGCTAAGATAGCTGATTTTAATCTCTCTAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCTACGCGTGTATTGGGAACCTTTGGTTATCATGCTCCAGAATATGCCATGACTGGACAGTTGACTCAAAAAAGTGATGTCTACAGTTTTGGCGTTGTTCTTCTTGAGTTGCTTACAGGTAGAAAACCCGTTGATCATACCATGCCTCGAGGACAGCAAAGTCTTGTCACTTGGGCTACCCCAAGGTTAAGTGAAGATAAAGTGAAACAATGCGTTGACCCGAAACTGAAAGGAGAATATCCCCCTAAAGGAGTTGCTAAGCTTGCAGCGGTAGCAGCACTTTGTGTGCAGTATGAAGCTGAGTTTAGGCCTAACATGAGCATTGTCGTTAAAGCACTCCAACCACTTCTAAAGGCTCCCGCGCCTGCACCCGAAACTTGA 1212 0.4439 MDHRSHFHHRHSAHAPHPPPDYFVRVGNSNKDDLYLRKRTRMRRWLCCTCQVEESYPSNENEHLKSPRGYGDGNTKGSRVSAPLKPEVQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNDGSAVAVKKLDVSTEPESNNEFLTQVSMVSRLKNENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLNWMQRVRIAVDAARGLEYLHEKVQPSIIHRDIRSSNVLIFEDYRAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAPAPAPET 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00052 403 Gene3D Phosphorylase Kinase; domain 1 82 188 - -
Vivi2g00052 403 MobiDBLite consensus disorder prediction 57 80 - -
Vivi2g00052 403 SMART tyrkin_6 112 390 IPR020635 GO:0004713|GO:0006468
Vivi2g00052 403 Gene3D Transferase(Phosphotransferase) domain 1 190 398 - -
Vivi2g00052 403 ProSitePatterns Tyrosine protein kinases specific active-site signature. 240 252 IPR008266 GO:0004672|GO:0006468
Vivi2g00052 403 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 45 398 - -
Vivi2g00052 403 MobiDBLite consensus disorder prediction 1 24 - -
Vivi2g00052 403 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Vivi2g00052 403 ProSiteProfiles Protein kinase domain profile. 112 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00052 403 FunFam PTI1-like tyrosine-protein kinase 3 190 400 - -
Vivi2g00052 403 FunFam PTI1-like tyrosine-protein kinase 3 74 188 - -
Vivi2g00052 403 Pfam Protein tyrosine and serine/threonine kinase 117 390 IPR001245 GO:0004672|GO:0006468
Vivi2g00052 403 SUPERFAMILY Protein kinase-like (PK-like) 91 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00052 Vivi-Chr2 2889719 2893493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00052 46 391 Receptor kinase-like Gene Family AT4G02010 46.418 2.02e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vivi2g00052 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00052 K13436 - mnt:21407434 674.855