Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00034 ATGCGTCGTTGGCTATGCTGCACTTGTCAGGTGGAAGAGTCTTATCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGGGTTATGGAGATGGCAACACAAAAGGTTCGAGAGTGTCAGCTCCTCTCAAACCTGAAGTACAAAAGGCACCACCACCTATCGAAGTTCCAGCATTATCCTTAGACGAGCTGAAGGAAAAAACAGACAACTTTGGTTCAAAGGCATTGATTGGTGAAGGGTCATATGGGAGGGTGTATTATGCAACATTAAACGACGGAAGCGCTGTGGCTGTGAAAAAGCTTGATGTTTCTACTGAACCTGAATCAAATAACGAGTTTCTAACCCAGGTTTCCATGGTCTCAAGATTGAAGAATGAAAATTTTGTTGAATTGCATGGATACTGTGTTGAAGGGAATCTTCGTGTACTTGCATATGAATTTGCTACTATGGGCTCTCTTCATGACATTTTGCACGGTAGAAAGGGAGTTCAAGGGGCACAACCTGGGCCAACACTTAACTGGATGCAGCGAGTTAGAATTGCGGTTGATGCAGCAAGGGGATTAGAATATTTACATGAGAAAGTTCAACCATCAATTATACATAGGGATATTAGGTCAAGCAATGTGCTTATCTTTGAAGACTACAGAGCTAAGATAGCTGATTTTAATCTCTCTAATCAGGCCCCCGACATGGCTGCACGCCTTCATTCTACGCGTGTATTGGGAACCTTTGGTTATCATGCTCCAGAATATGCCATGACTGGACAGTTGACTCAAAAAAGTGATGTCTACAGTTTTGGTGTTGTTCTTCTTGAGTTGCTTACAGGTAGAAAACCCGTTGATCATACCATGCCTCGAGGACAGCAAAGTCTTGTCACTTGGGCTACCCCAAGGTTAAGTGAAGATAAAGTGAAACAATGCGTTGACCCGAAACTGAAAGGAGAGTACCCCCCTAAAGGAGTTGCGAAGCTTGCAGCGGTAGCAGCACTTTGTGTGCAGTATGAAGCTGAGTTTAGGCCTAACATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGAAGGCTCCCGCGCCTGCACCCGAAACTTGA 1089 0.4417 MRRWLCCTCQVEESYPSNENEHLKSPRGYGDGNTKGSRVSAPLKPEVQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNDGSAVAVKKLDVSTEPESNNEFLTQVSMVSRLKNENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLNWMQRVRIAVDAARGLEYLHEKVQPSIIHRDIRSSNVLIFEDYRAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAPAPAPET 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00034 362 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vivi2g00034 362 Gene3D Transferase(Phosphotransferase) domain 1 149 357 - -
Vivi2g00034 362 MobiDBLite consensus disorder prediction 16 52 - -
Vivi2g00034 362 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
Vivi2g00034 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 357 - -
Vivi2g00034 362 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
Vivi2g00034 362 FunFam PTI1-like tyrosine-protein kinase 3 33 147 - -
Vivi2g00034 362 SUPERFAMILY Protein kinase-like (PK-like) 50 349 IPR011009 -
Vivi2g00034 362 Pfam Protein tyrosine and serine/threonine kinase 76 349 IPR001245 GO:0004672|GO:0006468
Vivi2g00034 362 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00034 362 FunFam PTI1-like tyrosine-protein kinase 3 149 359 - -
Vivi2g00034 362 Gene3D Phosphorylase Kinase; domain 1 40 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00034 Vivi-Chr2 2457053 2460897 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00034 5 350 Receptor kinase-like Gene Family AT4G02010 46.418 2.57e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vivi2g00034 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00034 K13436 - gmx:100790016 661.373