Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00025 ATGAAAACTCTAGAAGCTCAGTTTTCTCAGTCCAATGCATCATCATCACCATCACCATCAATTTATAATCACAAGAATGACATCAACATTTACAACAATACTATGCAGATGAATGTTTTTAACGGTGCTTATCATCATAATCTCCTTGTCGCAAGATCTTCACAGTCTCGTGAGCTACCATCCAATCAGACAGTTGTTGCTCCTACTAGTCATGTTGCATCTGTCGGGGTTCGTTTCAAGAAGAAAATTATTGATGATGGTATAATCCACACCCTACCACACAAGAAATACGGACCATATACATGTCCAAAGTGCTCTCAAGTGTTAGCTACTTCTCAGAAATTTGCTTCTCATGTGACTTCAAATCATTACAAGTTTGATAGTCCATAA 390 0.3769 MKTLEAQFSQSNASSSPSPSIYNHKNDINIYNNTMQMNVFNGAYHHNLLVARSSQSRELPSNQTVVAPTSHVASVGVRFKKKIIDDGIIHTLPHKKYGPYTCPKCSQVLATSQKFASHVTSNHYKFDSP 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00025 129 ProSitePatterns Zinc finger C2H2 type domain signature. 102 123 IPR013087 -
Vivi2g00025 129 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00025 Vivi-Chr2 1843794 1844183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00025 81 128 C2H2 Transcription Factor Family AT5G22990 62.500 1.72e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00025 - - vvo:131648304 249.21