LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g00021	ATGAATTTCAAGATTTTATTATTTCCTTCTTCTCCTCTTCCGCGTCCTTGTCCTTCTCCTTCTTCTTCTAATTCTATTGAGATGGGGTATGACCAAAACCCATTCACAATACACACCAATTCATTATCAAAAAACAACTATTCATCTTTAGCGACCAACAATTTCACTAGCCATGCTATTGGAATCACGAAAGCGATGCGGATGCTTGAAGTTCAATTCGGAAGTTCGCGTGCATCTCCGAGTAAAAATAATAATGAAGATGTCATCAAAGTCAACAATATTATAATGAATGCTTCCAAAGATTCTTATCATCCCAATCTCCATGGAAGTTCTTCATCACTTTCACAGGGATCGTTACCTCAGACGATTAATTTTCATGGTGATGACGTTACTGTTTGTGATAATAACAAAAGGAAGAGGAAGAAGATCAATGAAAATATTGACGATGGTAGAATACACAGCCTACCATTCAAGAAATATGGACCATACACGTGTCCAAAGTGCTATAAAGTATTGAATACATCTAAAAAATTTGCTAGTCATGTGGCGTCAACTCACTATAAGTTCGAAAGTGAAGAAGAGAGAAAGAAGAGATACATGTTTAAAATGCAAAAGAGATCAAATCTTCGTATTCAAAAACCCAATGATGAAACAACTACTATTGCTCATGTTGACGCATCGTCGAATCAACCACATCTTATAACTTCCATCAACGAGGATGATAAGAGTTTTGTTTCTCGAATTCCAACTTTTAGTGGAGTAATAGTCAAATTAGAGCCAAAAGATGATTAA	792	0.3561	MNFKILLFPSSPLPRPCPSPSSSNSIEMGYDQNPFTIHTNSLSKNNYSSLATNNFTSHAIGITKAMRMLEVQFGSSRASPSKNNNEDVIKVNNIIMNASKDSYHPNLHGSSSSLSQGSLPQTINFHGDDVTVCDNNKRKRKKINENIDDGRIHSLPFKKYGPYTCPKCYKVLNTSKKFASHVASTHYKFESEEERKKRYMFKMQKRSNLRIQKPNDETTTIAHVDASSNQPHLITSINEDDKSFVSRIPTFSGVIVKLEPKDD	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g00021	263	ProSitePatterns	Zinc finger C2H2 type domain signature.	165	186	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g00021	Vivi-Chr2	1557966	1558757	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g00021	149	221	C2H2 Transcription Factor Family	AT5G22990	56.164	1.34e-20	87.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Vivi2g00021		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g00021	-		-	vvo:131647462	493.426