Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi299g00013 ATGTGGTGTGGCTTCAAAGGTGGAAGCTTTTTATCTTTTGAGAAAATGGGGTTTTCGAATTTGGGGATGCATGTGCCAATTATTGTTACCTCCATGATTGTGATTCTAATGGGAAGTTTCTGTGTTGCAGAAACTGACCCTGTTGATGTTGCAGCACTCAATAGTCTATATGCTGCTATGGAGTCACCGCCTCTTCTAGGGTGGAAGCCTGAGGGAGGGGATCCATGTTTAGAAATTTGGCAAGGTGTGGAATGTGTCTTCACCAACATAACTTCCATACGACTGGTAGGCTTGAATTTGGGTGGAGAGCTCGGCAGTAATTTGGATTTTCCATCCATTATAGAACTTGATCTTAGCAACAACCATATTGGAGGTGCCATTCCGTTCACTTTACCACCTACTCTAACGAGCTTGTCTCTGGCAAGAAATCGGTTAAATGGAAGCATTCCCGATGCCTTATCCTTATTATCTTTTTTGGCAACCTTGGATTTGGCCGATAACAACTTGACCGGCGAGCTTCCTTCATCAATGGGGAGTTTATCATCTCTTACAGCTTTACGGTTGCAGAACAATCAACTCGGAGGGACCCTTTTAGTTTTGCAAGACCTTCCACTCGAGGAATTGAATATCGAGAATAATTTATTCTCCGGGCCAATTCCTCCGAACGTGTTGAACATCCCTAATTTGAAAAAAGACGGGAATCCGTTTAATACTTCTATTATTCCGACGCTGCCTGCTTTAGCCCCCTCACCTGAAGTTACCGGTCTATCTCCCGAAGAATCACCCTGGCACGTGGTTTATAGTCCTTCTGACTTCCCATCACCGTCGCCTGGAAATGTTAAGAAGTCTTTCCTAGCAAAGCACGGCTTTTGGATTGCCGGTGCCGGTGTATTAATATTTATCGCTTTGGGAATTTGTGTTTGTACAGCGTGGTGCTGTAAGAGAAACCCGAAAGATAAAAACTCTCAGAAGCTTGATGTGGAGGCTTTTCCAAATACTTTGCATAAACCTACTCACAATGACGCAGCTGAGAAAACATCGCGTTTCAATGAAGTTCCAAATAGGAGAACGAATTCGGTTCCAAAGGTTCAGGATGAACAAGATCGATATGTCAACACTGTATCTGCTGCAACTTCGGAATACAATAATGTTTCCAAACCTTCGCTCCTGCAGCCACCACCACATCCTCTACCAATAGTTCCCGCTGAAAAGGTCACCGTCAATTCTGCAGTAACTACCAATGCCACTGAACGAAAAATTATGACAAGTTCCGTCAAAATGTATACCGTTGCATCACTTCAACAATATACAAATAGCTTTTCCCAAGAAAATCTTATTGGTGAAGGCACTCTTGGATCTGTTTATAGAGCCGAGCTCCCTGATGGAAAGCTATTGGCGGTGAAGAAATTGGACACTAGAGCTTTCAAGGACCAAACCGACGAACAGTTTCTTCAATTGGTATCTAGCATCTCAAAAATCCAGCATGTTAATATTGCAAAGCTTGTGGGCTACTGTGCCGAGTATAACCAACGATTACTTATATATGAGTATTGTAATAACGGAACCCTACAAGATGCACTTCACGGTGATGACGAACATTGTATTAAATTTCCATGGAATGAACGCATTAAGGTCGCACTTGGTGCTGCAAGGGCTTTAGAGTATCTGCATGAGAATTTCCAGCCGCCCATTGTACATCGAAATTTTCGGTCTGCTAATGTTCTCCTGAATGAAAAGTCGGAAGTGTGTGTCTCCGATTGCGGATTAGGTCATTTGCTATCTTCTGGCGCTGTTGGTCAGTTATCTGGACGCCTCCTCACAGCTTACGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGATGTGTTTAGTTTCGGGGTTGTAATGCTAGAACTTCTCACGGGAAGAAAATCGCACGACAGGTCACGGCCTTGCGGAGAGCAGTTTTTGGTGAGATGGGCAGTACCTCAACTGCATGACATTGATGCATTGTCGAAAATGGTTGACCCTCACTTAAATGGATCATATTCTATGAAGTCCTTGTCGCGTTTCGCAGATATTGTTTCGTCGTGTATTCAGCGTGAACCTGAATTCCGGCCAGCTATGTCTGAAATTGTTCAGGATCTCTTGCTAACAATGTAG 2157 0.4358 MWCGFKGGSFLSFEKMGFSNLGMHVPIIVTSMIVILMGSFCVAETDPVDVAALNSLYAAMESPPLLGWKPEGGDPCLEIWQGVECVFTNITSIRLVGLNLGGELGSNLDFPSIIELDLSNNHIGGAIPFTLPPTLTSLSLARNRLNGSIPDALSLLSFLATLDLADNNLTGELPSSMGSLSSLTALRLQNNQLGGTLLVLQDLPLEELNIENNLFSGPIPPNVLNIPNLKKDGNPFNTSIIPTLPALAPSPEVTGLSPEESPWHVVYSPSDFPSPSPGNVKKSFLAKHGFWIAGAGVLIFIALGICVCTAWCCKRNPKDKNSQKLDVEAFPNTLHKPTHNDAAEKTSRFNEVPNRRTNSVPKVQDEQDRYVNTVSAATSEYNNVSKPSLLQPPPHPLPIVPAEKVTVNSAVTTNATERKIMTSSVKMYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKLLAVKKLDTRAFKDQTDEQFLQLVSSISKIQHVNIAKLVGYCAEYNQRLLIYEYCNNGTLQDALHGDDEHCIKFPWNERIKVALGAARALEYLHENFQPPIVHRNFRSANVLLNEKSEVCVSDCGLGHLLSSGAVGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDRSRPCGEQFLVRWAVPQLHDIDALSKMVDPHLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi299g00013 718 SUPERFAMILY L domain-like 45 230 - -
Vivi299g00013 718 Gene3D Phosphorylase Kinase; domain 1 402 517 - -
Vivi299g00013 718 Pfam Leucine rich repeat N-terminal domain 49 85 IPR013210 -
Vivi299g00013 718 Gene3D Transferase(Phosphotransferase) domain 1 518 716 - -
Vivi299g00013 718 Pfam Leucine rich repeat 133 193 IPR001611 GO:0005515
Vivi299g00013 718 Pfam Protein tyrosine and serine/threonine kinase 443 714 IPR001245 GO:0004672|GO:0006468
Vivi299g00013 718 SUPERFAMILY Protein kinase-like (PK-like) 419 715 IPR011009 -
Vivi299g00013 718 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 405 517 - -
Vivi299g00013 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 46 169 - -
Vivi299g00013 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 518 718 - -
Vivi299g00013 718 ProSiteProfiles Protein kinase domain profile. 440 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi299g00013 718 Gene3D Ribonuclease Inhibitor 46 257 IPR032675 -
Vivi299g00013 718 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 35 714 IPR046959 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi299g00013 35 715 Strubbelig Receptor Gene Family AT4G03390 50.332 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vivi299g00013 PK_Tyr_Ser-Thr 8.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi299g00013 - - gmx:100793423 941.799