Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi299g00006 ATGATGAATTTCAATTTCCGACACTGTTTGGGGAGGATGGAGATGAATCAGATGACGAGAAGCTTGCAATGGATATCGAGTCTTTTCTCAGCGTTCTTGATGAGGATTGTGATCCTTCTGAGTCACGAGGATTCTTCATTGAAAGACGTTTCACCTGGTGAATCTGGGACCCATGATAATTTTTTACTTCACAATGGGAATTCTTCCATGCTTGACTACGAACATGAAAACCAAGGACCTTCATCACAGACCTGCTATTCCCCAAATGCTTTTGCTGGTGGTTACAGGGACTCATTCTCTGTTGTGGAAAGTGATGAAACTTTCTATGCAGAAAGGGCAGGAGTTTCTGAACGTGAGATGCCTTTTTACAGTACAGACACTAGTTTCGCTGAAGCAAATTCAAATGCCGTAACTGTTTGTAGAGATAATTTGAACTCAAGTCTGTGGAAGGGTCACAATACTAGCCAAATCAAGCATGTGGCAGATGATGTAGAATCTGAATATGCTTCTCACAGCTCTATCATTGAGAATGTTAATGGAACTTTTGCAAATTATGGAACAGCTTTGAAAGACATTATTGGAGTTTCTAAGCAGCAGGAAAATGACTCATGCACAACTTCTGAAATGCCGTCTGTGGATGTTGACATGCCCACACATTTTGGAACTTCAACCGATTCTACTTTTTGTCAAGGTTCCGATGCTCCTAGTGATTTTAGTGGCTACTATCCATCTTTGAATTGTTACCAGGGTATAGATGTTAGACCTGTTGTTACTGACAGTTCTGCTTATTTGCCTAATGGTGTTTATCCTGAATTCTGGAAAAATGAAGAGACAACAATGGACATGAAGGTTGAAAAAATGGAGTTCTTAACTGATTCTGCAAATATGATTGGCGGCATGCATTTGAATACGTTTGGTCCAACCCCTTTTCAGGACAGGCAATTTATGCCAACAGATAGTGAATATCCTTCATTTTTTCCTGGTAATGTTATATTTGAAGACCGTGAATCAGTGCAACAATCATCTTGTGCTCCGTATATTTCTTGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGGTATGCCTTTCCAAAATACTTTTCACAATGACCATGCTGAGTTAAATGCTGGTCTTGGGGTGAAACAATTACCTCATATTTTCCCTACCATTGAATGTCAGAATTATGATTTTTTGAAGGATGAGGATAGTGACACAATCGTAAAATCTGAGGATGGCAATTATTATCAAGATCTTATCGATGAAACTGCTAAACGTTTTCCAGGAAATACAGGAAATTTGAATTTCAGATCCTTAGACAAATCTCTCTCTATTGCCCGGGCATCAATTACCAATGGGAAACAATATAATTGTGGTATGAGTGAACTAGAGAGTAAACCAAGCGAATATAAAAGTATTGATGATTCTCAACTTTCCAGAAGTACTGAGGGATCCAATGACGAAGATGACTGCGATGTTTGCATTATTGAAGAAATCAGTCACCCTGCACCTACAAGTCGATCTGCTGAACCCATTAATTCTCGTAATATGTCACAATCTTCTAGATTTGACTATACTAAACCGTATATGGCGGGAGGCACAAGACCAAAACCCCGCGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCTCAGCCAAAGTCAGAAGTTAGTCCCCCAGATGGGTTGTTGGCTGTTCCCCTTTTACGTCACCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTTCTTTAATACTAAAGGAAAGGCCTCCATTGCTCAAGACATGCAAAAGTGCACAAAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTTCCTGATAATGGTGAAGTGAAGAAGGAATCTAACGTGTGTCAACAAGATACATCTAACAGAAATGCAATCACAGGTGGGAATTTGTCTGTGCACACAAAAGGCAGGCCATCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGACAGTGGGCTGACGAACTGCAAAATAAAGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGTAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCCAGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGACGGAGAAAAAGAAACTTACGAAGATCATGCTATGCCGAGTAAGAAAAGGAAATGCCCTGCTAGTTCAAAAAGCAGCAAGAAGAAAGGTTTGGACAGCATGATGCTTGAGGATGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCCGGAACTCCAATCCAGAATTCAATTGATGATCTCTATAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCTTTCTGTTCAACAATCAAGATTCCCATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTGCAAACTATCTTAAAGACGATCATGTTACGTCGGACAAAAGGCTCACTTCTGGATGGGGAGCCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATACGCCGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCCTGCGACCACCCTCAGCTTGTTAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCTGTTGAGACGGCCATGAAGCTTCCTCGGGAAAAACAGCTATATCTTTTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGTATCTGTAATGATGCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGCATTTCTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCTACAAATTGCAAAACTCGACTTAGCATGTCTTCAGTGTTTCCCAAAGCCACACTGAACAGTTCTTTATCTGATCAGTCTTGTGATCTTTTGCTTGGTTGCTCTGGTTCTGAGGTTGAGGATTCTGAACCCTGTTCTCAGACTAAGCTATATAATTCTTCAAAAATAAAAGCTGCACTTGAGGTGTTGCAGTCATTGTCAAAGCCACAATGTCGGACTTCCCAAGAAAATTGTGTGCCAAGCACTTCTAAAGAAAGTACTGATTGCAGCTCCACTTCTGCTGACAGTGGAAAATCTTTTAGTGATGTTCACAAAAAGAAAACTATGTTAAAGGAGAAAAGCTCTAATGGTGCAATTGGTTCTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTTGATTTACTTGAAGCGTGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGCACAATGTCTGTCCTTGCAAGAGATAAAGCTGTTAAGGACTTTAACACACTCCCTGAGGTAACAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTTGCAGCCTGCCATGTTCTCATGCTTGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCACATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGTTTAACTGTCAAAGATACGGTTGAAGACCGTATTTTAGCCCTGCAGGAAAAGAAGCGAAAGATGGTTGCATCTGCGTTTGGAGAGGATGAAACAGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3975 0.4116 MMNFNFRHCLGRMEMNQMTRSLQWISSLFSAFLMRIVILLSHEDSSLKDVSPGESGTHDNFLLHNGNSSMLDYEHENQGPSSQTCYSPNAFAGGYRDSFSVVESDETFYAERAGVSEREMPFYSTDTSFAEANSNAVTVCRDNLNSSLWKGHNTSQIKHVADDVESEYASHSSIIENVNGTFANYGTALKDIIGVSKQQENDSCTTSEMPSVDVDMPTHFGTSTDSTFCQGSDAPSDFSGYYPSLNCYQGIDVRPVVTDSSAYLPNGVYPEFWKNEETTMDMKVEKMEFLTDSANMIGGMHLNTFGPTPFQDRQFMPTDSEYPSFFPGNVIFEDRESVQQSSCAPYISCEGQSFNVKAEGDEMGMPFQNTFHNDHAELNAGLGVKQLPHIFPTIECQNYDFLKDEDSDTIVKSEDGNYYQDLIDETAKRFPGNTGNLNFRSLDKSLSIARASITNGKQYNCGMSELESKPSEYKSIDDSQLSRSTEGSNDEDDCDVCIIEEISHPAPTSRSAEPINSRNMSQSSRFDYTKPYMAGGTRPKPRDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTISLILKERPPLLKTCKSAQKSVLETLDLDDDPLPDNGEVKKESNVCQQDTSNRNAITGGNLSVHTKGRPSAGTLVVCPTSVLRQWADELQNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSQEVPKQPLVDKDDGEKETYEDHAMPSKKRKCPASSKSSKKKGLDSMMLEDAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQTILKTIMLRRTKGSLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPQLVKRYNSTTLWKSSVETAMKLPREKQLYLLKCLEASLALCGICNDAPEDAVVSVCGHVFCNQCISEHLTGEDNQCPATNCKTRLSMSSVFPKATLNSSLSDQSCDLLLGCSGSEVEDSEPCSQTKLYNSSKIKAALEVLQSLSKPQCRTSQENCVPSTSKESTDCSSTSADSGKSFSDVHKKKTMLKEKSSNGAIGSLGEKAIVFSQWTGMLDLLEACLKNSSIQYRRLDGTMSVLARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQEKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 638 675 - -
Vivi299g00006 1324 Gene3D - 909 1323 IPR027417 -
Vivi299g00006 1324 SUPERFAMILY RING/U-box 1007 1066 - -
Vivi299g00006 1324 Gene3D - 545 637 IPR038718 -
Vivi299g00006 1324 ProSitePatterns Zinc finger RING-type signature. 1025 1034 IPR017907 -
Vivi299g00006 1324 Gene3D - 666 754 IPR038718 -
Vivi299g00006 1324 Gene3D - 783 895 IPR038718 -
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 747 769 - -
Vivi299g00006 1324 CDD DEXDc_SHPRH-like 573 894 - -
Vivi299g00006 1324 SMART ring_2 1010 1048 IPR001841 -
Vivi299g00006 1324 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 588 856 IPR014001 -
Vivi299g00006 1324 Pfam Zinc finger, C3HC4 type (RING finger) 1010 1046 - -
Vivi299g00006 1324 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 457 1323 - -
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 1119 1144 - -
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 461 492 - -
Vivi299g00006 1324 Pfam Helicase conserved C-terminal domain 1169 1266 IPR001650 -
Vivi299g00006 1324 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 776 906 - -
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 652 675 - -
Vivi299g00006 1324 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1148 1319 IPR001650 -
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 746 783 - -
Vivi299g00006 1324 SMART ultradead3 569 871 IPR014001 -
Vivi299g00006 1324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1003 1061 IPR013083 -
Vivi299g00006 1324 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 666 753 - -
Vivi299g00006 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 1323 IPR027417 -
Vivi299g00006 1324 ProSiteProfiles Zinc finger RING-type profile. 1010 1049 IPR001841 -
Vivi299g00006 1324 SMART helicmild6 1183 1266 IPR001650 -
Vivi299g00006 1324 Pfam SNF2-related domain 593 972 IPR000330 GO:0005524|GO:0140658
Vivi299g00006 1324 CDD SF2_C_SNF 1164 1276 - -
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 509 528 - -
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 1119 1146 - -
Vivi299g00006 1324 MobiDBLite consensus disorder prediction 506 540 - -
Vivi299g00006 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 894 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi299g00006 496 1323 RAD5 or RAD16-like Gene Family AT1G61140 63.389 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi299g00006 SNF2_N 6.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi299g00006 - - gmx:100805307 1702.95