Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi299g00003 ATGCCAAAAGGATTTATAAAAACCGTGACCAACCTGAAAAACAAAATTGATCTGTCTCGACCAACATCAGAAGTTAATCTCCCAGATGGGCTATTGGCAGTTCCTCTTTTACGTCATCAGAGAATTTCTCTATCGTGGATGGTTCAAAAGGAAACATCAAGTTTACGCAGTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACTGTGTCAACTATTGCTTTAATACTAAAGGAAAGGCCTCCGTTGCTCGAGACGTGCAACACTGCACAAAATAGTGTATTAGAAATCGTGGATTTGGATGATGATCCACTTCCAGAGAATGGTGTAATGATGAAGGAATTTGACGCGCATCAAGATACATCTAGAAATGGAAAAGAAATCACAAGTGTGATATCGGGTCACGCAAAAGGCAGGCCATCTGCAGGAACCCTTGTTATTTGTCCGACCAGTGTCCTGCGACAGTGGGCTGACGAACTGGATAATAAAGTAACCTGGAAAGAAAATCTCTCTGTGCTTGTGTACCATGGAAGCAATCGAATCAAAGATCCTCATGAGCTTGCCATGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCATGGAGATCCCTAAAGATGGCGGACAAAAAGAAACTAATGAAAATCATGCTACAACGAGTAAGAAAAGGAAATGTCCTCCTAGCTTAAAAAGCGGCAAGAAGAAGGATGATGCAGGTCCTCTTGCAAAAGTAGCCTGGTATAGAGTTGTCCTTGATGAGGCCCAAAGTATAAAGAATCACAGAACTCTTGTTTCAAAGGCTTGCTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTTCGGAACTCCAATCCAGAATTCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGATGAGCTCACAACATTCTGTTCAAAAATCAAGGTTCCTACCAACAATAATCCATCAGTAGGGTATATAAAGCTACAAGCTATCTTAAAAGTGATCATGTTACGTCGGACAAAAGACACAATTCTTGATGGGGAGCCTATTATATGTTTGCCACCTAAACGTGTGAAGTGCAAAAGAGTGACATTTTCACAGGAGGAACATGACTTCTATTCCAAGCTAGAGACTGACTTCTATCTTGATAAAGAATACGCCGATGCTGGTACTGTGAAGCAAAACTACGTTCACATTTTATCGATGCTTTTGCGCCTTAGACAAGCTTGCAACCACCCTCAACTTGTTAAGGGTTACAATTCTACTTCTCACTGGACATCTTCAGTTGAGACGACCGTTAAGATTCCTCGGGAAAGACAGCTTATTTTTTTGAAATGTTTAGAGGCTTGCGTGACTCTTTGTGGTATCTGTAATGATGTTCCTGAAGATGCTGTTGTTTCAGTCCGTGGTCATATTTTCTGTAACCAATGCATTTCTGAACATCTAACTGGGGAGGACATTCAGTGCCCTGCTACAAACTGCAAAACTCAACTTAGCGAGTCTTCAGTGTTTTCCGAAGCCACACTGAACGATTCTTTATCTGATCGGTCTTGTGATCTTTTGCTTGGTACCTCCGGTTCTGAGGTAGAGGATTCTGAACCTTTTTCAAAGACTCGGCCAATTTATTCTTCAAAAATAAAAGCTGCACTTAAGGTGTTGCAGTCATTTAAGCGGAAATGTCTTTGA 1695 0.4094 MPKGFIKTVTNLKNKIDLSRPTSEVNLPDGLLAVPLLRHQRISLSWMVQKETSSLRSSGGILADDQGLGKTVSTIALILKERPPLLETCNTAQNSVLEIVDLDDDPLPENGVMMKEFDAHQDTSRNGKEITSVISGHAKGRPSAGTLVICPTSVLRQWADELDNKVTWKENLSVLVYHGSNRIKDPHELAMYDVVLTTYSIVSMEIPKDGGQKETNENHATTSKKRKCPPSLKSGKKKDDAGPLAKVAWYRVVLDEAQSIKNHRTLVSKACWGLRAKRRWCLFGTPIQNSIDDLYSYFRFLRYDPYDELTTFCSKIKVPTNNNPSVGYIKLQAILKVIMLRRTKDTILDGEPIICLPPKRVKCKRVTFSQEEHDFYSKLETDFYLDKEYADAGTVKQNYVHILSMLLRLRQACNHPQLVKGYNSTSHWTSSVETTVKIPRERQLIFLKCLEACVTLCGICNDVPEDAVVSVRGHIFCNQCISEHLTGEDIQCPATNCKTQLSESSVFSEATLNDSLSDRSCDLLLGTSGSEVEDSEPFSKTRPIYSSKIKAALKVLQSFKRKCL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi299g00003 564 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 220 354 - -
Vivi299g00003 564 MobiDBLite consensus disorder prediction 208 240 - -
Vivi299g00003 564 MobiDBLite consensus disorder prediction 210 224 - -
Vivi299g00003 564 Gene3D - 127 354 IPR038718 -
Vivi299g00003 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 557 IPR027417 -
Vivi299g00003 564 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 16 561 - -
Vivi299g00003 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 304 IPR014001 -
Vivi299g00003 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 536 IPR013083 -
Vivi299g00003 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 342 IPR027417 -
Vivi299g00003 564 CDD DEXDc_SHPRH-like 36 342 - -
Vivi299g00003 564 SUPERFAMILY RING/U-box 456 502 - -
Vivi299g00003 564 Gene3D - 390 440 - -
Vivi299g00003 564 SMART ultradead3 32 319 IPR014001 -
Vivi299g00003 564 Pfam Zinc finger, C3HC4 type (RING finger) 457 493 IPR018957 GO:0046872
Vivi299g00003 564 Pfam SNF2-related domain 55 419 IPR000330 GO:0005524|GO:0140658
Vivi299g00003 564 Gene3D - 7 100 IPR038718 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi299g00003 4 561 RAD5 or RAD16-like Gene Family AT1G61140 54.746 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi299g00003 SNF2_N 2.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi299g00003 - - vvo:131628565 1134.01