Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi297g00022 | ATGGCTAGAAAAAAGGTGAAGCTTGCTTTCATTGAGAATGATAACGCAAGGAAATCAACATACAAGAATCGAGAGAAGGGTTTAGTGAAGAAGATTGATGAACTAGCAACCCTTTGCGGTGTTGAGGCTTGTGCTATAATTTATGGCCCCTACGAACCACAACCTGAGATCTGGCTTTCGGCATCCGGAGTACAAAACGTGCTTTCGAAATTCATGACAAAGTCTGAGTTCGAACAAAGAAAAAAGATGGTGAATCAGGAGAGTTTTCTGAAAGAAAGGATTTCGAAGGCTGAAAAGCAATTTGAAAAGCAATGGAAAGACAACAGAGAGAAAGAGAGAACCATGTTCTTGTTTGAATGTCTCAGTGCTGGGAACGTGGTGCAGAAGGATATGTCGGTGGCTGGTTTGAATCATCTTGCTTGGATGATTGATCAGAATCTTAAGGAGATTAGCAGAAGGATTGAAGCAGATGATAGAAACAGTAATATTCATCAATGTGAAAGCCAAGAACATCTCCAAATGGAACAGTCACTGCTGCTACCATTGGCGCTGCCACCACCAACCATGTCCAATAATGAAGACATTGCAATGATGAGTCATGGCCATCTTCCACCACCACCGCCACCACAACCAACCACGCCGAATAATGATGAAATTGCAATGAATAATAATGACATCATGATGAATGCAAATCTGTAG | 699 | 0.4163 | MARKKVKLAFIENDNARKSTYKNREKGLVKKIDELATLCGVEACAIIYGPYEPQPEIWLSASGVQNVLSKFMTKSEFEQRKKMVNQESFLKERISKAEKQFEKQWKDNREKERTMFLFECLSAGNVVQKDMSVAGLNHLAWMIDQNLKEISRRIEADDRNSNIHQCESQEHLQMEQSLLLPLALPPPTMSNNEDIAMMSHGHLPPPPPPQPTTPNNDEIAMNNNDIMMNANL | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi297g00022 | 232 | MobiDBLite | consensus disorder prediction | 200 | 232 | - | - | |
| Vivi297g00022 | 232 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
| Vivi297g00022 | 232 | MobiDBLite | consensus disorder prediction | 215 | 232 | - | - | |
| Vivi297g00022 | 232 | SUPERFAMILY | SRF-like | 3 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
| Vivi297g00022 | 232 | Coils | Coil | 80 | 100 | - | - | |
| Vivi297g00022 | 232 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
| Vivi297g00022 | 232 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
| Vivi297g00022 | 232 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677|GO:0046983 | |
| Vivi297g00022 | 232 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
| Vivi297g00022 | 232 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 174 | - | - | |
| Vivi297g00022 | 232 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi297g00022 | 1 | 168 | Type I MADS-box Gene Family | AT5G48670 | 54.167 | 7.87e-51 | 166 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MADS-M-type | Vivi297g00022 | SRF-TF | 2.7e-15 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi297g00022 | - | - | vvo:131658560 | 268.855 |