Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi297g00015 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGAGAAGAATGATGCATTATGCATTAAGGAATGTGAAAAAGGTTGCTGTTCTTGTGTTTGTTGTTTGTCCCCTTCCACTTGTTCTTCTTCTAGCTCCACTTCACCTCTTGTTTCTTCTTCTTATCTTGAGCTTTGGCATGCTTGTGCTGGCCCTTTGATTTCTCTTCCTAAGAAAGGAAATGTTGTGGTTTATTTTCCACAAGGGCATTTGGAACAATATGCTTCTTTCTCTCCTTTTAAGCAATTGGAGATACCGAACTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATATACAGCTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAGGCTGAGTTGGCAGGTATGCATATGGAGGGAAAAGAAGTTGAGGAATTAGAAGGCGATGAAGAGGGAGATGGAGGGTCACCTACAAAATCAACTCCTCACATGTTCTGCAAGACACTAACAGTTTCTGATACCAGCACTCATGGTGGCTTCTCTGTGCCTCGTAGAGCTGCGGAAGACTGTTTTCCTCCTTTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCTAAAGACTTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCGAGGCGGCATCTACTCACTACTGGCTGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGGGAGCTGAGATTGGGAATCAGAAGAGCTGTAAGACCTAGAAATGGTCTTCCTGAATCAGTTATTGGTAACAAGAACTGTTATCCTAATTTCCTTTCTTCTGTGGCAAATGCTATTTCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCCGAATTTGTTGTTCCCTACCAAAAATATGTTAAAAGCATCAAGAATCCGGTGACCATAGGGACAAGATTCAAAATGAGATTTGAAATGGACGAATCGCCCGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAATGAATGATTTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTGATGGTTCGATGGGATGAGGATATGGAGACTAATCATCAAGACCGAATATCTCCGTGGGAGATCGATCCTTCGAATCCTCTGCCTCCTCTAAGCATTCAGTCTTCTCCAAGACTGAAAAAACCGCGGACCAGTCTGCAGGTTGCCTCCCCCAGTCACCTTACCACTGCAAGAAGCAGTGGAATGATGGGCTTTGAGGAGTCAGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTATGTCACTATACTATGGATGTGACAAAGGAACCAACCAGCCAGGTTTTGATTTGAGCTCTTCGAGTCATCATCGAAATCTCACATCAACCGGAATAGGAAAAGTAGTTACCTCTTCCGAGCTTATGAGTGTTCACCCTTTCGGTTACGCAGGCTTTATGGAAAGTAACAACTTTCCAACGGTCTTGCAAGGTCAAGAAATATGTAAACTAAAATCCTTAACAGGAAAAGTCGATTTCAACATCGGTGCTTGGGGAAAATCCAATGCAAGTTGCACGCCTTTCAACCTTCATCAAGCAACCAAACAACACAACTTTCAATCTGCATATTTTCCTTATGGAGATATTCACAAAGCTGATCAAGCTAACATGTTTAGCTCAAAACATACCAGTTTCCTAGGAGAGAATGTCGGGTTTAACGCGCCATCGATAGTTGCAGGGAACATTAGAAATGAAGTTGGGATATCTGAATCTAATCTCCCAATTGAGCATAAGCTGCAGGAAAATATTTCGGTTTCTGCTTCATTAGGGACTGCTGATATAAAGGTTCCGAATGATAACAATGTCAACGGAAAGGTAAACTCCTGCAAACTGTTCGGGTTTCCTTTGTCTGCAGAAACTAGTTCTCAAAATTCACAGAACACTGCAAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGTTTAGTTGGAAGAGCCGTTGATCTCTCGAGGTTGAGCGGCTACATTGATCTTCTGAGTGAACTAGAGAAACTATTTGGAATGGATGGCCTTCTTAGAGACTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGTGATGATCCATGGCATGAGTTTTGTGATGTGGTATCAAAGATCCATATATATACCAAAGAAGAAGTGGAGAAGATGACATTTGGGATGAACAATGATGATACTCATAGCTGTTTGGAACAGGCACCAGTGCTTATTGAACCTTCTAAGTCTTCCTCAGTTGGTCAGCCAGATTATTCTCCAACAGTAGTTAGAGTTTAA 2409 0.4197 MEIDLNHEVTEIEKNDALCIKECEKGCCSCVCCLSPSTCSSSSSTSPLVSSSYLELWHACAGPLISLPKKGNVVVYFPQGHLEQYASFSPFKQLEIPNYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMHMEGKEVEELEGDEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESVIGNKNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPVTIGTRFKMRFEMDESPERRCSSGMLIGMNDLDPYRWPKSKWRCLMVRWDEDMETNHQDRISPWEIDPSNPLPPLSIQSSPRLKKPRTSLQVASPSHLTTARSSGMMGFEESVRSPKVLQGQENSGFMSLYYGCDKGTNQPGFDLSSSSHHRNLTSTGIGKVVTSSELMSVHPFGYAGFMESNNFPTVLQGQEICKLKSLTGKVDFNIGAWGKSNASCTPFNLHQATKQHNFQSAYFPYGDIHKADQANMFSSKHTSFLGENVGFNAPSIVAGNIRNEVGISESNLPIEHKLQENISVSASLGTADIKVPNDNNVNGKVNSCKLFGFPLSAETSSQNSQNTAKRSCTKVHKQGSLVGRAVDLSRLSGYIDLLSELEKLFGMDGLLRDSDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMNNDDTHSCLEQAPVLIEPSKSSSVGQPDYSPTVVRV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi297g00015 802 FunFam Auxin response factor 330 403 - -
Vivi297g00015 802 ProSiteProfiles PB1 domain profile. 674 756 IPR000270 GO:0005515
Vivi297g00015 802 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 763 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi297g00015 802 FunFam Auxin response factor 669 763 - -
Vivi297g00015 802 Pfam AUX/IAA family 664 758 IPR033389 -
Vivi297g00015 802 MobiDBLite consensus disorder prediction 145 164 - -
Vivi297g00015 802 SUPERFAMILY DNA-binding pseudobarrel domain 159 278 IPR015300 -
Vivi297g00015 802 FunFam Auxin response factor 165 269 - -
Vivi297g00015 802 Gene3D - 165 269 IPR015300 -
Vivi297g00015 802 CDD B3_DNA 165 267 IPR003340 GO:0003677
Vivi297g00015 802 MobiDBLite consensus disorder prediction 402 436 - -
Vivi297g00015 802 MobiDBLite consensus disorder prediction 390 439 - -
Vivi297g00015 802 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
Vivi297g00015 802 Pfam Auxin response factor 293 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi297g00015 802 SMART B3_2 167 269 IPR003340 GO:0003677
Vivi297g00015 802 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Vivi297g00015 802 Gene3D - 669 763 - -
Vivi297g00015 802 Gene3D - 331 402 - -
Vivi297g00015 802 SUPERFAMILY CAD & PB1 domains 669 753 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi297g00015 49 802 B3 DNA Binding Superfamily AT5G60450 59.791 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi297g00015 AUX_IAA 2.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi297g00015 - - gmx:100783513 1262.28