Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi297g00010 ATGATGTCCAAACAACCCTTTTCAGTTTCACCTCATTCCAACACCATGAGAGCTTCTTCATCAAACCATCTTCAAAACCTAAACCAAAACCAAAACCCTAATCCAAATCCATCTAAGAAAAAAAGAAACCTACCTGGAACACCAGATCCAGATTCAGAAGTGATAGCCATGTCGCCGAAATCCTTGATGGCGACGAACCGTTTCTTGTGTGAAATCTGCAACAAGGGATTCCAAAGAGACCAGAATTTGCAGCTTCATCGGCGCGGACATAATTTGCCATGGAAGCTGAAGCAAAGAGCTAACAAGGATCAAATTCGGAAGAAGGTTTATGTGTGTCCTGAGAAGAGCTGTGTGCACCATGAACCTTCTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTAACAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGCAAAATTTGTGGAACTAGAGAATACAAATGTGATTGCGGCACAATTTTCTCCAGGAGGGACAGCTTCATAACACATAGAGCTTTTTGTGAAGTCTTGACTGAACAAAGTGCAAAGATATCAATACCAACAGTTCCAAGAATTTTTCATAATGATCATTTCACAAGTATTACTCAAACTCCAAGGATCCCTCAAATTTTTCCTGGCTTTCAGTTTCACTCAGAGTTTGTTGGTTCAGGAACATCGTCATCATTATGGCCAGCACTAGAGCAATCAAATTTTCAGCAACTTCATCCTAGTTCATCAGATGTTATGCAAACAATGGACGTGTTTGGATCACAGGCACAGACGCAGACGCAGACACAGACACAGATGCAGTGGTTGAATTATAATAGTAATAATAATAATAATCTATCTTCGCCGATGATGCTACACGGAGTAATGAAGCAAGAGGAAGAAGAAAACAAAGATTTGTCTCATAGTGTAATAAGCTCATTGTACTTGAGTAGTAACCAGAATCAAGAAAGAGGATCAAATCACATGTCAGCAGCAGCAACGACAACGTCACTGTTGGAGACAGAATCTCAAATGGGATCTACAAGGACAGGTATTACTAATGACAACAACAGCAACAACAACGACACACTCTTCAACAATGTGAACCACTTTAGCATTGTTGACAAATTCTACAAACAAGGTCATCATCATCATCATCATCATGAAAGTGAAGACTTGAATGAGTTGGTGAATTTGGAAGGAAGTAGCAGAAGCAATTTTGGAGGTGAGTATGCATTAAATGACTCATTTGGGACTGTGAATGGTACCAAGAGTTTGGACCATGTGATGATGTTGGTGGATAGAGAGACAAGAACAACAACAAATGGATATTTACATGATTCAAGTTTGAGGCCAAATGACAAAAACCAAATGGGTTTTACAAGAGATTTTCTCGGGGTTGGAGATGATGATGAGTCAATGAGTAGATCAAGTTTTTTGCAGCAAGAGCTTGATGAGTTTCATGGAATGGGATCGTTAGGGAATAATCTGCAGAGCCAGTTTCGTGGTGGTGGAGACTATTGCTAG 1572 0.3963 MMSKQPFSVSPHSNTMRASSSNHLQNLNQNQNPNPNPSKKKRNLPGTPDPDSEVIAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKSCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCNKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCEVLTEQSAKISIPTVPRIFHNDHFTSITQTPRIPQIFPGFQFHSEFVGSGTSSSLWPALEQSNFQQLHPSSSDVMQTMDVFGSQAQTQTQTQTQMQWLNYNSNNNNNLSSPMMLHGVMKQEEEENKDLSHSVISSLYLSSNQNQERGSNHMSAAATTTSLLETESQMGSTRTGITNDNNSNNNDTLFNNVNHFSIVDKFYKQGHHHHHHHESEDLNELVNLEGSSRSNFGGEYALNDSFGTVNGTKSLDHVMMLVDRETRTTTNGYLHDSSLRPNDKNQMGFTRDFLGVGDDDESMSRSSFLQQELDEFHGMGSLGNNLQSQFRGGGDYC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi297g00010 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 495 IPR031140 -
Vivi297g00010 523 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vivi297g00010 523 MobiDBLite consensus disorder prediction 355 376 - -
Vivi297g00010 523 MobiDBLite consensus disorder prediction 1 54 - -
Vivi297g00010 523 FunFam protein indeterminate-domain 12-like 47 116 - -
Vivi297g00010 523 Gene3D Classic Zinc Finger 123 203 - -
Vivi297g00010 523 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Vivi297g00010 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vivi297g00010 523 Gene3D Classic Zinc Finger 47 122 - -
Vivi297g00010 523 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Vivi297g00010 523 MobiDBLite consensus disorder prediction 1 41 - -
Vivi297g00010 523 SMART c2h2final6 145 165 IPR013087 -
Vivi297g00010 523 SMART c2h2final6 68 90 IPR013087 -
Vivi297g00010 523 SMART c2h2final6 110 140 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi297g00010 30 202 IDZ Gene Family AT3G50700 82.184 4.05e-109 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi297g00010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi297g00010 K25870 - gmx:100781896 468.388