Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi297g00001 ATGGCTTCCTCAAACAATTCCATAGCAGAAAACAAAAAAGCCAAAAAACCAGAAACCTCAACACCTACCAGCAAAATCAAAAAGGAAAAAGACGTAGAAAAATCCAGTGAGAAGAAGAAGAAGAACAACGAGGAGATCAAAAGCAACAAGAGTAAGAAACTCAAGTTCGCCAATGGAAATTCCAAAGAAAAAGAAGATAACGGAATAAAACACGAGAACGACATTGAAGAAGAAGAAGAAGCGAAAACGAACGTGTTTCCGATGAGTCGAATCAGGACGATAATCAAAGCGGAAATCAGCGATTTGCGTGTTACTCAGGAAGCTATATTGGCGATTAACAAGGCTGCGGAGAAGTTTCTTGAACAATTGGCTCTGGAAGCTTATGCTTGTTGTGCTCAGGATCGTAAGAAATATCTAAGTTACAATCACCTATCAAATGTTGTTAGTAAGCAAAAAAGATTCGACTTTCTGTCTGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGACAATCTCAAGAGGGGAAAGAGGCGGTTAG 549 0.3916 MASSNNSIAENKKAKKPETSTPTSKIKKEKDVEKSSEKKKKNNEEIKSNKSKKLKFANGNSKEKEDNGIKHENDIEEEEEAKTNVFPMSRIRTIIKAEISDLRVTQEAILAINKAAEKFLEQLALEAYACCAQDRKKYLSYNHLSNVVSKQKRFDFLSDFVPEKVKAEDALRETISRGERGG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi297g00001 182 MobiDBLite consensus disorder prediction 11 83 - -
Vivi297g00001 182 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 43 174 - -
Vivi297g00001 182 Gene3D Histone, subunit A 69 163 IPR009072 GO:0046982
Vivi297g00001 182 MobiDBLite consensus disorder prediction 1 83 - -
Vivi297g00001 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 86 148 IPR003958 -
Vivi297g00001 182 SUPERFAMILY Histone-fold 86 162 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi297g00001 72 144 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.096 6.83e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi297g00001 CBFD_NFYB_HMF 8.6e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi297g00001 - - vvo:131628524 287.73