Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi296g00011 ATGAACAACACTGTTCCTGAATGGAATTTTGGGAGTGATAATACTTTTGTCACCAATCAAAAGAAGCAATCTATGGGGCTTGATCATGAACTTGTGGAGCTTCTATGGGAGAATGGTCAAGTAGTGTTGCATAGCCAAACAAATAAGAAACCGATGAATTCGAGACATGTTCATAAGAATCTTCAATCAACAACATTAAGCAACTTGATTCAAGACGATGAAACTGTTTCATGGATCCAACAATACCCTATTGAGGATCCGATTGGACAAGAATTATGTTCGAATCTTTTATCTGAACTTCCGCCTTGTCATATTGACTCTTACGATTCACAGCCGACTAATACGAAGCCGTCTTTTGTCGAGGAGTTCTCAATTCCTAGGTTTCATCATCACGTTCCCGATTCGTCGCAGAAAAACAATGATTTGTGTGGATCGAACAAGGTCGTAAACTTTTCTCACTTTTCAAGACTTCCTAATGTTTCTTTGGCATGTAATAACGGGGATGGAGAATTAAGAGACAAAGTTACGGGAAATCTGTCGCAATGTGATGTTAGAGAGAACTCGGCGATGACAGTTGGTTTGAGTCATTGCGGTAGCAACCAAGTCCAACAAGATCCGGATGTAAGCAGAGTATCAAGCGATGGTATTTGGACGAATACTATATCGGCCGAGCCTCATCGAGTCAAAGACAATGTTCAGAGAACAACAGTTCCTTGTTATGAGAAAGGGAAATCGCCGACTTTTACTTCATCTTCCGGTGGTTCGGGAAGTAGTCTTGGAAAAACATGTTCCTTATCTACAAGAAGTCATGGAGAAAAGAGAAAAGCGATAGATGTCGAAGATTCGGTGGAACAAAGCGAGGACACCGAACTTAAATCAGCCTTGTCGAACAAGGTGTCTCAGAGGTCAGGGTCGGGTCGAAGGAATCGGGCTGCCGAAGTGCATAATCTTTCAGAAAGGAGACGAAGAGATAGGATTAATGAGAAGATGAAAGCACTGCAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCGGGCATGACACCAATGATGCATCCTGGATTTCAGCACTACATGACACAAATGGGCATGGCAATGCCTACACCTTCATTTCCTCAGCTTCAAAATCCGATGCAATTACCGAGAATGCCTTTTGATCCGTCCGTTTCGTCCACTCAGACACCAAATCCGACCTTAATGTGTCAAAATCCTCTTTTAGGTGCCTTTAACTACCAAAACCAGATGCAAAATCCAGCTCTTTCAGAGCAATACGCTCGTTACATGAACTATCATCTCATGCAAAACGCTTCTCAGCCGATGAATATGTACCGATATGGTCCCCAAACTGTACAAAATAGTCAAACAATGATTCCAACCAGCAATAACTGTGGATCAATGAGTGGAGCAGCAAACATTAATGGTACTGTGAGTGGCAAAATGGGTAGGCCAATACATAGCTCTCTATTGTCATAG 1548 0.4193 MNNTVPEWNFGSDNTFVTNQKKQSMGLDHELVELLWENGQVVLHSQTNKKPMNSRHVHKNLQSTTLSNLIQDDETVSWIQQYPIEDPIGQELCSNLLSELPPCHIDSYDSQPTNTKPSFVEEFSIPRFHHHVPDSSQKNNDLCGSNKVVNFSHFSRLPNVSLACNNGDGELRDKVTGNLSQCDVRENSAMTVGLSHCGSNQVQQDPDVSRVSSDGIWTNTISAEPHRVKDNVQRTTVPCYEKGKSPTFTSSSGGSGSSLGKTCSLSTRSHGEKRKAIDVEDSVEQSEDTELKSALSNKVSQRSGSGRRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMHPGFQHYMTQMGMAMPTPSFPQLQNPMQLPRMPFDPSVSSTQTPNPTLMCQNPLLGAFNYQNQMQNPALSEQYARYMNYHLMQNASQPMNMYRYGPQTVQNSQTMIPTSNNCGSMSGAANINGTVSGKMGRPIHSSLLS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi296g00011 515 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
Vivi296g00011 515 MobiDBLite consensus disorder prediction 289 307 - -
Vivi296g00011 515 FunFam Basic helix-loop-helix transcription factor 305 368 - -
Vivi296g00011 515 PANTHER TRANSCRIPTION FACTOR PIF3 18 481 IPR044273 GO:0003700|GO:0006355
Vivi296g00011 515 CDD bHLH_AtPIF_like 310 373 IPR047265 -
Vivi296g00011 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Vivi296g00011 515 Coils Coil 316 336 - -
Vivi296g00011 515 SMART finulus 316 365 IPR011598 GO:0046983
Vivi296g00011 515 Gene3D - 306 366 IPR036638 GO:0046983
Vivi296g00011 515 MobiDBLite consensus disorder prediction 267 288 - -
Vivi296g00011 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 376 IPR036638 GO:0046983
Vivi296g00011 515 MobiDBLite consensus disorder prediction 237 316 - -
Vivi296g00011 515 MobiDBLite consensus disorder prediction 238 266 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi296g00011 8 490 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 36.290 4.67e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi296g00011 HLH 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi296g00011 K16189 - gmx:100784531 651.358