Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi295g00007 ATGTTGATAACTGTAACAAAACCGTCCCCTTCTCTCCGCTGTCCGTCGCTTAACAACCGTCGCACACCAACAAAACCCAATCTCTCTCCCCGTCTCCTCCGTTCATCTTCCCGTCAACACAACCTCTCCCTCCGTCTCCGTTCATCCTCCTCCTCCAATCTCTCCACCAGCTGCGACCTAGCAAACTTCGATCCTTTAGGCATTAACACTGATTCATCTCCTACTTGGAAAAATCTACTCACTGTCTTTCAAGCCTCTTCGGAAAAGGATAAACCTCGAGGCGTAGCAGCTGCAATTGAGGATAGTTCAATTGATTTTGGTGATTTCTTTAATGGTCCACTGCCTGGGAAGTTTCTCAAGCTTTTAGGGTTTCTCGCATTGTCGAGGCTCGGAGTGTATATACCATTAGGTGGAGTTAATAGGGACGCGTTTCTCGGAAATTTGGATCAGAACAGTTTATTATCTACTTTGGACTCGTTTTCTGGTGGAGGTATTGGTAGACTTGGGATATGCTCTCTTGGCATTGTTCCGTTCATTAATGCGCAGATTGTTTTTCAGCTTCTTGCTCAAGTGTATCCTAAATTGCAAGATCTTCAGAAGAAAGAAGGGGAGGCGGGAAGGAAGAAGCTTCTTCAGTATACTAGATATGCTTCGGTTGGATTTGCTGTTGTACAGGCTATCGGACAAGTTCTTTTCCTGCGTCCTTATGCGAATGATTTTACTACGGAGTGGGCGCTTACTTCTGTTATCTTGCTCACACTTGGATCTGTCTTTACGACGTACATTGGGGAACAAATTACCGAACTCAAACTTGGGAATGGTACATCGCTTTTGATATTTACAAACATTATATCCTACTTGCCAGCTTCTTTTGGTCGCACGTTTTCACAGGCGTTTAGTGAAGCTAACTATGTTGGACTTGTTACCATCATTGTCTCTTTCTTTCTGTTGGTACTTGGTATTGTCTATGTTCAGGAAGCTGAGAGAAAAATTCCTATCAATTATGCTTCTAGATTCACCAGCAAAAGCGGTGGACTTGAAAAATCTGCTTACCTGCCGTTTAAGGTAAATAGTTCTGGGGTAATGCCTATCATTTTTTCTACATCATCATTAGCTCTTCCGGGTACTTTAGCTCGCTTCACTGGTTTAAGCTCACTAAAAACTGCTGCAGTGGCTTTGAATCCAGGAGGTTCCTTCTATCTTCCATTTAACATATTTTTGATAGCCTTCTTCAACTACTATTATACTTTCCTACAACTGGATCCTGATGATGTGAGCGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAAAAGTACTGCTACATTTATCAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCAATCTTGGCTGCTGGACCTGCAGTTGTTGAGCAGTTCGCACACTTGACTGCATTCCGGGGATTTGCTGGAACATCTATTCTTATTCTGGTTGGTTGTGCGACAGACACAGCAAGAAAAGTTCGAGCTGAGATTATATCCCAGAAGTACAAAAACATAGAGTTATATGATTTTGATAAGTATTGA 1578 0.424 MLITVTKPSPSLRCPSLNNRRTPTKPNLSPRLLRSSSRQHNLSLRLRSSSSSNLSTSCDLANFDPLGINTDSSPTWKNLLTVFQASSEKDKPRGVAAAIEDSSIDFGDFFNGPLPGKFLKLLGFLALSRLGVYIPLGGVNRDAFLGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKLLQYTRYASVGFAVVQAIGQVLFLRPYANDFTTEWALTSVILLTLGSVFTTYIGEQITELKLGNGTSLLIFTNIISYLPASFGRTFSQAFSEANYVGLVTIIVSFFLLVLGIVYVQEAERKIPINYASRFTSKSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSSLKTAAVALNPGGSFYLPFNIFLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQFAHLTAFRGFAGTSILILVGCATDTARKVRAEIISQKYKNIELYDFDKY 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi295g00007 525 MobiDBLite consensus disorder prediction 1 37 - -
Vivi295g00007 525 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 110 517 IPR002208 GO:0015031|GO:0016020
Vivi295g00007 525 ProSitePatterns Protein secY signature 2. 261 278 IPR030659 -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 359 378 - -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 487 505 - -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 242 267 - -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 168 188 - -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 453 471 - -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 118 136 - -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 210 233 - -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 398 420 - -
Vivi295g00007 525 PRINTS Preprotein translocase SecY subunit signature 268 291 - -
Vivi295g00007 525 Pfam SecY 170 501 IPR002208 GO:0015031|GO:0016020
Vivi295g00007 525 Gene3D SecY subunit domain 109 514 IPR023201 -
Vivi295g00007 525 SUPERFAMILY Preprotein translocase SecY subunit 111 508 IPR023201 -
Vivi295g00007 525 Hamap Protein translocase subunit SecY [secY]. 106 518 IPR026593 -
Vivi295g00007 525 ProSitePatterns Protein secY signature 1. 169 188 IPR030659 -
Vivi295g00007 525 NCBIfam preprotein translocase subunit SecY 117 514 IPR002208 GO:0015031|GO:0016020
Vivi295g00007 525 PIRSF SecY_Sec61alpha 93 525 IPR002208 GO:0015031|GO:0016020
Vivi295g00007 525 FunFam Preprotein translocase subunit SECY, chloroplastic 109 514 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi295g00007 37 525 Chloroplast and Mitochondria Gene Families AT2G18710 79.482 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi295g00007 K10956 - gmx:100810430 791.956