Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi295g00004 ATGGCCAAACTGTCTCAAGAACAAACTCAAAAAAACAATGCAAGTAATAACAATAACCTTAATGCAACTAACACCAAAGTGAAAAGAACAAGGAGAAGTGTCCCGAGGGATTCTCCAATTCAACGTAGCTCAATATATAGAGGAGTCACTAGGCATAGATGGACCGGGCGATATGAAGCTCATTTGTGGGACAAGAATAGTTGGAATGAATCGCAAAACAAGAAAGGACGACAAGTCTACCTTGGTGCTTATGATGATGAAGAGACTGCTGCACATGCTTATGATCTAGCTGCATTGAAATATTGGGGCCGAGATACTATTCTTAACTTTCCGTTATGTAGCTACGAGAATCAGTTGCGAGAGATGGAGGATCAATCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGTGGTTTTTCTCGCGGAGTTTCTAAATATAGAGGCGTGGCAAGACACCATCATAATGGAAGGTGGGAGGCTCGTATTGGGAGAGTTTTTGGCAACAAATATCTTTATCTTGGAACATATGCTACACAAGAAGAAGCAGCCACAGCATACGATATGGCAGCTATTGAATATCGTGGACTCAATGCTGTCACCAATTTCGACCTCAGCCGTTATATTAAGTGGCTAAAGCCTAATCACAATGATAACAATAACAAACTTGTTCATAATTCTAGTAATAACCCAATCTCTGACACCAAATTTATCCCAAACATGATGATGACTAATCAAAATGAGTCATTAGGAGGAGAAGAAGAACTAGTACAGCCTCGACCAGCTGGCACGACGTCGGCATTAGGTCTTTTGCTTCAATCATCAAAGTTTAAGGAGATGATGGAAATGACAAATGCTGCTGATTTGTCAACCCCAGAAAACTCTTACACATTTCCTGATCACATTCAGACATACTTTGAGTCTTCCACTGAATATGGGGATGATTTATTCAATGTGCCCTCTTTATTCCCTTCTCATGATGACTTTGATCACGGCTTCAGTATCTAG 1011 0.4045 MAKLSQEQTQKNNASNNNNLNATNTKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNSWNESQNKKGRQVYLGAYDDEETAAHAYDLAALKYWGRDTILNFPLCSYENQLREMEDQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNDNNNKLVHNSSNNPISDTKFIPNMMMTNQNESLGGEEELVQPRPAGTTSALGLLLQSSKFKEMMEMTNAADLSTPENSYTFPDHIQTYFESSTEYGDDLFNVPSLFPSHDDFDHGFSI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi295g00004 336 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 234 - -
Vivi295g00004 336 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Vivi295g00004 336 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 FunFam AP2-like ethylene-responsive transcription factor 44 113 - -
Vivi295g00004 336 CDD AP2 44 111 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 SUPERFAMILY DNA-binding domain 44 112 IPR016177 GO:0003677
Vivi295g00004 336 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
Vivi295g00004 336 MobiDBLite consensus disorder prediction 1 38 - -
Vivi295g00004 336 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Vivi295g00004 336 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Vivi295g00004 336 MobiDBLite consensus disorder prediction 1 28 - -
Vivi295g00004 336 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Vivi295g00004 336 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi295g00004 41 209 AP2-EREBP Transcription Factor Family AT5G57390 72.189 2.36e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi295g00004 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi295g00004 K09285 - gmx:100795869 461.455