LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi294g00026	ATGAAGTGTTTCTTCTTCAAAGAGAAATCCAAATCCGCTCCTGAATTACAAAACCAAACCAAAAAGAAGAAGAATCCGGCGTCGAATCGCGCAGCAAACTCCACCGGTTCTGTGTCTTCGTCAAAGAGTGTGAAGGATTTGTACAAAGAGAAGGAGCATAGTTTTAGAGTTTTCACTCTTCAAGAACTTAGAGAAGCTACCAATGGTTTTAACAGGATGTTCAAGATTGGAGAAGGGGGTTTTGGAAGTGTTTATAAAGGATCGATTTTGCCTCCGAATGGACAAGGTGATCCAGTTCAAGTTGCCATCAAAAGGCTTAACACGCGTGGATTTCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTAAAGCTTTTGGGATATTGCTCTGTAGATGGAGAAAGAGGAATCCAACGGCTGTTGGTGTATGAGTACATGCCAAACAGGAGTTTGGAAAACCACCTTTTCAGTAAAACTTTACCGGTCCTTCCATGGAAAACAAGATTGGAGATCATGCTCGGTGCTGCTCAAGGGTTGGCTTATCTACATGAAGGGTTGGAGATACAGGTGATCTACCGAGATTTCAAATCTTCAAACGTTCTATTGGACGAGGATTTTGATCCGAAGCTCTCAGATTTTGGTCTTGCAAGGGAAGGGCCACAAGGGGATCAAACTCATGTATCTACTGCGGTAGTAGGGACACAAGGATATGCTGCGCCAGAGTATATTGAAACAGGTCATCTCAAAGTCCAGAGTGACATGTGGAGTTTCGGAGTCGTACTCTACGAGATCCTCACAGGAAGAAGATCATTGGAAAGGAACCGTCCGACAGCTGAACAAAAGCTATTAGATTGGGTAAAACAGTATCCTGCAGACAGTAGCAGATTCAACATGATAATGGACCCACGTCTTAGGAACCAATATCCGAATGTTGCAGCGCGTAAAATAGCAAAGTTGGCCGATAGTTGCTTGAAGAAGAATCCAGAAGACAGACCTTCTATGAGTCAGATAGTGGAAGGGTTGAAAGAAGCATTGCAATATTCAGAAATGTCAAATACTTCTCATGATAATGCCGAATCTTCTCGGTCAAAATTGGTTCGGAAAGGTCAATAG	1143	0.4261	MKCFFFKEKSKSAPELQNQTKKKKNPASNRAANSTGSVSSSKSVKDLYKEKEHSFRVFTLQELREATNGFNRMFKIGEGGFGSVYKGSILPPNGQGDPVQVAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEYMPNRSLENHLFSKTLPVLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDEDFDPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSSRFNMIMDPRLRNQYPNVAARKIAKLADSCLKKNPEDRPSMSQIVEGLKEALQYSEMSNTSHDNAESSRSKLVRKGQ	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi294g00026	380	PANTHER	OS01G0588500 PROTEIN-RELATED	29	353	-	-
	Vivi294g00026	380	ProSiteProfiles	Protein kinase domain profile.	70	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi294g00026	380	ProSitePatterns	Protein kinases ATP-binding region signature.	76	104	IPR017441	GO:0005524
	Vivi294g00026	380	MobiDBLite	consensus disorder prediction	1	18	-	-
	Vivi294g00026	380	Gene3D	Phosphorylase Kinase; domain 1	40	155	-	-
	Vivi294g00026	380	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	156	365	-	-
	Vivi294g00026	380	MobiDBLite	consensus disorder prediction	19	43	-	-
	Vivi294g00026	380	CDD	STKc_IRAK	76	353	-	-
	Vivi294g00026	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	200	212	IPR008271	GO:0004672\|GO:0006468
	Vivi294g00026	380	Gene3D	Transferase(Phosphotransferase) domain 1	156	378	-	-
	Vivi294g00026	380	SUPERFAMILY	Protein kinase-like (PK-like)	52	349	IPR011009	-
	Vivi294g00026	380	MobiDBLite	consensus disorder prediction	358	380	-	-
	Vivi294g00026	380	Pfam	Protein tyrosine and serine/threonine kinase	75	350	IPR001245	GO:0004672\|GO:0006468
	Vivi294g00026	380	MobiDBLite	consensus disorder prediction	1	45	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi294g00026	3	351	Glycoside Hydrolase	AT3G07070	43.575	1.54e-92	282

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Vivi294g00026		PK_Tyr_Ser-Thr	1.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi294g00026	-		-	gmx:100305403	645.58