Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi293g00024 ATGTCATTTCGGAGTATTGTTCGTGACGTGAGGGATGGAATTGGAAGTTTATGGAGTCCGCGTTTTGAGGTGAGGCTTCCTGGAGATCAGAACGGGAAGTCGAGGAGTTCGGTCCATGAGTTGCAGGATCAGCCTCCTGTTATACAGAATAGCCGGTGGGCGAGTTTACCGCCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAATCTAATGAGAGTACTTGGCCTAGTCGGAAACATGTGGTTGCGTGTGCTGCAGTGTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCTTGAGTATTGTGGGAAGATTACTTTCCCGGTTTCACTGAAACAGCCCGGGTATAGAGATGGACCAATCCAGTGTTTCATCAAGAGGGACAAATCTAAGCTGACATACCACCTTTTCCTTTGCCTCAGTCCCGCTTTGCTAGTTGAAAATGGAAAATTTCTTCTCTCGGCTAAACGCACCAGAAGAACGATTTGCAATGAGTATGTTATATCAATGGATGCAGATAACATATCACGATCTAGCAGCACTTACATTGGAAAGCTTAGGTCTAATAATTTTCTTGGAACCAAGTTCATAATTTACGATACACAGCCTCCATATAACAATGCTCAGTTGGCGGCTCCACCTGGACGCAACAGCAGTAGATTCTACTCAAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAACTACAACGTCGCACAGGTCACCTATGGCTTTAATGTCCTCGGCACCCGAGGTCCACGCACCCAAGGTCCACGAAGGATGAATTGCACTATGTACTCAATCCCTTCATCATCCCTTGAGCCCGGTGGCGTTGTCCCAGGCCAGCCAGAGCTCATTTCTCGCTCACTCGAGGATTCTTTCCGTAGCTTATCCTTTGCAAGGTCAATCGATAACTCAACCGAGTTTAGCAGTTGTAGATTCTCGGGCATAATGGGAGCTAGCATAATGGAAGATAGAAATGAAGACGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAATCTTCAGGATGGAACGAACAGCAGCAATGCTGGTGCCTTGACTTTAGGGGACGCGTGACCGTAACGTCCGTCAAGAATTTTCAGCTGATCGCTTCAACACAGCCAGCAGCCGTCCCTCCTTGCGCAGCAACAGGACCTGCGCCGTCGCAGCCGGCTCAGTCTGACCATGACAAGATTATTCTTCAGTTCGGTAAGGTTGGCGAGGACATGTTTACGATGGACTATCGATACCCTCTCTCGGCGTTTCAGGCTTTTGCGATATGCTTGACTAGCTTTGACACAAATATTTATTAG 1326 0.4729 MSFRSIVRDVRDGIGSLWSPRFEVRLPGDQNGKSRSSVHELQDQPPVIQNSRWASLPPELLRDVIKRLESNESTWPSRKHVVACAAVCKSWREMCKEIVSSLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTICNEYVISMDADNISRSSSTYIGKLRSNNFLGTKFIIYDTQPPYNNAQLAAPPGRNSSRFYSKKVSPKVPSGNYNVAQVTYGFNVLGTRGPRTQGPRRMNCTMYSIPSSSLEPGGVVPGQPELISRSLEDSFRSLSFARSIDNSTEFSSCRFSGIMGASIMEDRNEDEEGKERPLVLKNKSSGWNEQQQCWCLDFRGRVTVTSVKNFQLIASTQPAAVPPCAATGPAPSQPAQSDHDKIILQFGKVGEDMFTMDYRYPLSAFQAFAICLTSFDTNIY 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi293g00024 441 Gene3D - 48 102 - -
Vivi293g00024 441 FunFam Tubby-like F-box protein 48 101 - -
Vivi293g00024 441 Pfam F-box domain 53 99 IPR001810 GO:0005515
Vivi293g00024 441 CDD F-box_AtTLP-like 53 97 - -
Vivi293g00024 441 PANTHER TUBBY-RELATED 36 439 - -
Vivi293g00024 441 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Vivi293g00024 441 Pfam Tub family 114 438 IPR000007 -
Vivi293g00024 441 SUPERFAMILY Tubby C-terminal domain-like 103 439 IPR025659 -
Vivi293g00024 441 Gene3D Tubby Protein; Chain A 112 437 IPR025659 -
Vivi293g00024 441 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Vivi293g00024 441 PRINTS Tubby superfamily signature 400 419 IPR000007 -
Vivi293g00024 441 PRINTS Tubby superfamily signature 359 375 IPR000007 -
Vivi293g00024 441 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vivi293g00024 441 PRINTS Tubby superfamily signature 341 358 IPR000007 -
Vivi293g00024 441 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vivi293g00024 441 PRINTS Tubby superfamily signature 421 441 IPR000007 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi293g00024 1 440 TUB Transcription Factor Family AT1G76900 64.410 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi293g00024 Tub 1e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi293g00024 K19600 - gmx:100810531 703.36