Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi293g00020 ATGGATATTTCCTCCGGTGAGAATATCGTGCCGCCGTCGTCGGTGAACGGCGGCGGTGAGGATGATGATAAGATGAATATGAATATGAACGGTGGTGGTGGTGGAGGAAATAGGTGGCCCCGCCAAGAAACATTGGCTCTCTTGAAGATAAGATCAGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGGTGAACTTGGTTATCATAGAAGCTCAAAAAAGTGCAAAGAGAAATTTGAGAATGTATACAAGTACCATAAAAGAACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACATATAGATTCTTTGATGAGTTACAAGCACTTGAGAAAAAAATCACATTCTCTTCTACTTACCCTCCAAAACCACTTCCAAATAATACCACACTCTCATTACCACCAACAATATTGCCTAATGAAGCCACAAAAACAATATCACATGTTACCAATATTACTATTCCATCCACAAACCCTACCACACTTATTTCTCCTTCGCAACCACCGCCAACGCCACCACCACAATTAACCAATGCAACAACCGCGACCAACCCTAACGCCAACAACAATGTTTCATATTCTTTACCGAATATGAACGTGAACCTATTCTCAACCACGACCACCTCAACTTCTTCTTCCACGGCTTCTGACGAAGACTTGGAAGAGAAGTATAGAAAGAAGAGAAAATGGAAAGACTATTTCAGGAGACTCACAAGAGAAGTGCTTGCGAAACAAGAGGACATGCAAAAGAGATTCTTGGAAGCCATAGACAAGCGCGAAAAGGAACACATGGCTCAACAAGATGCTTTGAGAGTTCAAGAAATGGCTAGAATCAATAAAGAGCATGAACTTCTTGTCCAAGAAAGATCAACAGCAGCTCAAAAGAACGCCGCGGTTATTGCTTTTCTCCAGAAATTGTCTGGACAACCACCACCACAACCACAACCACAACCACCACCACCACCACCAGCATCATCAGAGCTCTCTCCAACTCCGGTATCACAAATACAAACGCAACAACTAATGATACCAAACAACAACATTGTTGAGATTCAGAATATGAATAATGGTCACCAAAGTGCTTGTGATGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTCCATGCTCTAATAAGGATAAGAACAAGTCTAGAACCAAAGTATCAAGAAAATGGTCCAAAAGCACCATTGTGGGAAGACATCTCAGCTGGAATGAAGAGACTTGGTTACAATAGGAATGCAAAAAGATGCAAAGAAAAGTGGGAGAATATCAACAAGTACTACAAAAAAATGAAAGAAAGTAACAAGCAAAGGCGCGACGATAGTAAAACATGTCCTTATTTTAACGAACTCGAAGCTCTTTACAAAGAAAAGAACAAGTTACAGAACCCTTTTGGTTCTAACTCGTTTCATAGCATGAAGTCAAGTGAAATGATGGAGCCATTGATGGTGCAACCTGAACAACAATGGAGACCTCCAACTCAATATGAAGAAGGTCATGAGGTGAAGAAGAATACCAACAACGAAGAAAAACAAGATGATAACGGTGATGTTGACGACGAAGAAGATGATAACATGGATGACTATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTAACAAATAAACTTCCATCAATGAACACATGA 1719 0.4049 MDISSGENIVPPSSVNGGGEDDDKMNMNMNGGGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDELQALEKKITFSSTYPPKPLPNNTTLSLPPTILPNEATKTISHVTNITIPSTNPTTLISPSQPPPTPPPQLTNATTATNPNANNNVSYSLPNMNVNLFSTTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTREVLAKQEDMQKRFLEAIDKREKEHMAQQDALRVQEMARINKEHELLVQERSTAAQKNAAVIAFLQKLSGQPPPQPQPQPPPPPPASSELSPTPVSQIQTQQLMIPNNNIVEIQNMNNGHQSACDVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKRLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEALYKEKNKLQNPFGSNSFHSMKSSEMMEPLMVQPEQQWRPPTQYEEGHEVKKNTNNEEKQDDNGDVDDEEDDNMDDYEDGDSMEEDEGGVSSRYEVVTNKLPSMNT 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi293g00020 572 SMART sant 379 441 IPR001005 -
Vivi293g00020 572 SMART sant 35 97 IPR001005 -
Vivi293g00020 572 Pfam Myb/SANT-like DNA-binding domain 37 123 IPR044822 -
Vivi293g00020 572 Pfam Myb/SANT-like DNA-binding domain 381 468 IPR044822 -
Vivi293g00020 572 FunFam Trihelix transcription factor GT-2 383 444 - -
Vivi293g00020 572 MobiDBLite consensus disorder prediction 499 572 - -
Vivi293g00020 572 Gene3D - 383 444 - -
Vivi293g00020 572 Gene3D - 39 100 - -
Vivi293g00020 572 PANTHER FI21293P1 16 528 - -
Vivi293g00020 572 MobiDBLite consensus disorder prediction 169 198 - -
Vivi293g00020 572 MobiDBLite consensus disorder prediction 527 551 - -
Vivi293g00020 572 CDD GT1 381 446 - -
Vivi293g00020 572 ProSiteProfiles Myb-like domain profile. 37 95 IPR001005 -
Vivi293g00020 572 MobiDBLite consensus disorder prediction 322 341 - -
Vivi293g00020 572 MobiDBLite consensus disorder prediction 175 189 - -
Vivi293g00020 572 FunFam Trihelix transcription factor GT-2 39 100 - -
Vivi293g00020 572 CDD GT1 38 102 - -
Vivi293g00020 572 MobiDBLite consensus disorder prediction 508 526 - -
Vivi293g00020 572 ProSiteProfiles Myb-like domain profile. 381 439 IPR001005 -
Vivi293g00020 572 MobiDBLite consensus disorder prediction 319 348 - -
Vivi293g00020 572 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi293g00020 31 503 Trihelix Transcription Factor Family AT1G76890 51.004 8.95e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi293g00020 Myb_DNA-bind_4 5.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi293g00020 - - gsj:114370603 622.468