Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi293g00018 ATGCTGGGTGACCACTCACCTCTTCTGGGTGGCGGTGGAGACACATCAACACCCAACATGACGGCGGAAGGTGGTGGTGGTGGCGGAGTTGGATCAAATTCTGAAAGTGATATTGAAAGAAGTAGAATTGAAGAAGGTGAACGTAGCTTCGGCGGTAACCGGTGGCCGCGGCCGGAAACTTTGGCGCTTTTAAGGATACGATCCGATATGGATACTGTTTTTCGAGATGCAAGTGTTAAAGGTCCTCTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTTTCACAGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAGTACCACAAGAGAACTAAAGATGGTAGAGGTGGAAAATCAGATGGTAAAACTTATAGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATAACCACCCTTCAACTTATCAACAACAACAATATCAGCCACAAAACCAATCAAAATCACCACAAATTTCAGCATCAATGTCAACACCAACACCGACACCGACACCGTCGCAAGTTGTTACAACTGGGATAACAGAATCAACAACAACAGTGCCAATGTCATTGCCACCAGTGGTTAACACAACCGTTAGTATCCCTCATCATGTAACTGTTTCATCAATTTCAATGCCTCAAAACAATGTTGTAACAACCCAAACCCAAACCCAAACAATGAATATGAACCAAACAGTTTCCTCCATTAATCCTTCAACTAGTTTCCAACCACCAACAACAAACCCTATCACCACCATTCCTCTTCCACCTTTCCCTAACATTTCTCCAGATCTGCTATCCAATTCCATGGCGAGCTCGTACTCGACCTCTTCTGAAGACACAACGGAAGAAGGATCGCGAAAGAGGAAGCGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTGAGAAACAAGAGGATTTGCAGAAGAGATTCTTGGAAGCCATTGAGAAACGGGAACAAGAAAAAGTGGCTAGAGAAGAAGCGTGGAGAGCACAAGAGATGCTAAGAATCACTAGAGAGAGGGAAATTCTTGCACAAGAGAGATCTATAGCTGCAGCAAAAGATGCTGCAGTTATGTCTTTCTTGCAGAAAATTGCAGAACAGCAAAATCTAGGAGAAACATTAAGTAACATCAACATTGCTCAACCACCTCCACCACAACAACCACAAAGAAATGCAACACCACCACCCGTTCCCGCACCAGCACCAACTCCAACTCCAACAGCAGCACCGGCACCAACATCAGCACCAGCTCCAACTCCAACAGCAGCACCCGCACCAACATCAGCACCAGCATCAACATTAGCAGTACAAGTGCATGCACCACCGCCATTGCAACCACCGTCTGTTACAAAGCCGAGCCAACCAATTGTCCCACAGCAGCCATTGGTGATGAATAGGGAGATAGTAAGGTTTGATAATAACGGTGAGAATTTCATGGGAGCAAGTCCGTCGAGGTGGCCGAAAGTGGAAGTTGAAGCACTCATAAATCTGAGAACAAGCATGGACAACAAGTACCAAGAGAATGGACCAAAAGGCCCTCTATGGGAGGATATATCTTCAGCAATGAGAAACCTTGGGTACAATAGGAATGCCAAAAGGTGCAAGGAAAAATGGGAGAACATAAACAAGTACTTCAAAAAAGTGAAAGAAAGTAACAAGAAGAGACCAGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTATACAGGGAGAAAGGCAAAGGAGACAATTCCGGTGGCAGTGGCAGCGGCAGTGGTTTAAACTCGGCAGTGAAAGCAGAGAACATGGCCGCTCCGTTGATGGTGAGACCGGAGCAGCAATGGCCACCTCAACAAGAAGAGAGAAACCGCGGAGAGGAAGAAGATAATATGGATGAAGATGATAGAGATGGAGAAGAAGAAGATATGGATGAAAGTGGTAGCGGTGGTGGTAACTTTGAGATAGTTGCAAGCAAGCCAGCAGTGGGTGCATCAGCTTGA 2022 0.4461 MLGDHSPLLGGGGDTSTPNMTAEGGGGGGVGSNSESDIERSRIEEGERSFGGNRWPRPETLALLRIRSDMDTVFRDASVKGPLWDEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHNHPSTYQQQQYQPQNQSKSPQISASMSTPTPTPTPSQVVTTGITESTTTVPMSLPPVVNTTVSIPHHVTVSSISMPQNNVVTTQTQTQTMNMNQTVSSINPSTSFQPPTTNPITTIPLPPFPNISPDLLSNSMASSYSTSSEDTTEEGSRKRKRKWKDFFERLMKEVIEKQEDLQKRFLEAIEKREQEKVAREEAWRAQEMLRITREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGETLSNINIAQPPPPQQPQRNATPPPVPAPAPTPTPTAAPAPTSAPAPTPTAAPAPTSAPASTLAVQVHAPPPLQPPSVTKPSQPIVPQQPLVMNREIVRFDNNGENFMGASPSRWPKVEVEALINLRTSMDNKYQENGPKGPLWEDISSAMRNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKGKGDNSGGSGSGSGLNSAVKAENMAAPLMVRPEQQWPPQQEERNRGEEEDNMDEDDRDGEEEDMDESGSGGGNFEIVASKPAVGASA 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi293g00018 673 Pfam Myb/SANT-like DNA-binding domain 53 139 IPR044822 -
Vivi293g00018 673 Pfam Myb/SANT-like DNA-binding domain 495 582 IPR044822 -
Vivi293g00018 673 Coils Coil 300 331 - -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 585 673 - -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 387 445 - -
Vivi293g00018 673 ProSiteProfiles Myb-like domain profile. 495 553 IPR001005 -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 392 436 - -
Vivi293g00018 673 FunFam Trihelix transcription factor GT-2 55 116 - -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 147 182 - -
Vivi293g00018 673 CDD GT1 53 118 - -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 268 286 - -
Vivi293g00018 673 CDD GT1 495 560 - -
Vivi293g00018 673 SMART sant 493 555 IPR001005 -
Vivi293g00018 673 SMART sant 51 113 IPR001005 -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 37 52 - -
Vivi293g00018 673 Gene3D - 55 116 - -
Vivi293g00018 673 Gene3D - 497 558 - -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 266 296 - -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 633 654 - -
Vivi293g00018 673 FunFam Trihelix transcription factor GT-2 497 558 - -
Vivi293g00018 673 ProSiteProfiles Myb-like domain profile. 53 111 IPR001005 -
Vivi293g00018 673 MobiDBLite consensus disorder prediction 1 55 - -
Vivi293g00018 673 PANTHER FI21293P1 21 642 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi293g00018 473 622 Trihelix Transcription Factor Family AT1G76880 65.584 7.30e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi293g00018 Myb_DNA-bind_4 2.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi293g00018 - - vvo:131628407 1073.15