Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi293g00007 ATGGGGAAGAAGAAGCCATCGGCACGTGACGACGAGAATCCTCCGCAGCAAGGCGGTGGGAAATCGAAGAAAAAGTCTCAAGTCATCGACGACGATGAATACTCCATCGGAACTGAACTTTCAGAGGAGCCATCCTTGCCGCAGCCAGAAGAAAAGCAAGAAAAGCCAGGAAAAAAGAAAGGTAAAAAAGGTAACTCTAAATCTTTACAAGCTAAAGATAATGGTGATGATTTTGATGAGGAGAACGACGATGATGTGCCTGAAATTGTGTTTGCTGGGAAGAAAAAGGGGAAATCGAAGAAAAGTGGCAGTGGGAGTGTGTTTTCTGCTGCGGCTGGTTTTGGTTTGCTTGGGGATGAGGGGGAAGTTGATAATGATGACGATGAAGAGAAATCTGAGTTAACGGGTAATGGAGATGATGATGAGGATGAACCAGTTGTTAGTTTTACTGGGAAGAAGAAGTCTTCAAAAGGAAACAAGAAGGGCAGTTCTTCGTTTTCAGCGGTTAGTTTTGATGAGATTGATGGAGAGGATGAGAGTAAGAATGATAAGGTAGAAGACGACGATGATGAGGATATAGGACCAATCACTTTCACAGGTAAGAAGAAGAAGTCATCCAAGTCTTTGAAGAAGGCGGTTAGTTTTTCAAGTACAGATATTCCGGATGAAGATAGTGTTTCTGTATCTGAGTCTGCTAAGGGTGGCGAAGATAAAGATGAAGACGATGTTTCCTTAGTTGAATTTACTGGTAAAAAGAAGTCATCTAAGAAGAAAAGTGGTAGTGCTGCTGCTAAAGTGAGTAATGAAGATGAGTTTGGGAGTGAAAGTGTAGATGTTGTTGAGAGTGAGAAACCTAGTGCTAATGTTGACAATGGCAATATAAGTAAGAGTGAAGAGGTTGTTGGAACTTCAAAAAATAAGAAAAAGAATAAGAAGAAGAGTGGGAGAACTGCTCAAGAGGAGGAGGATTTAGATAAGATTCTTGCAGAGCTTGGTGAAGCCCCTCCTACAGCAAAACCTTCTGCTCCTCCAAAGCAGGATGATAAAGTTCAGCCTGCTCCGGAAGTTGGTTCTGTCCCTGGTGCTTCAGGGGAAAAAGAGGGAGAAGAGGAGATTGTAGAATCAGCTGCTGCAAAAAAGAAGAAAAAGAAGAAAGAAAAGGAGAAGGAGAAGAAGGCAGCAGCAGCAGCAGCCGGAAGTTCAACGGCAAATGAAACGGCAGAAGTAGAGGCTGAGACAATTGAACCAAAGAAAAATGATTTGAAGTCCAAAGCAGCTGCTGACAAGAAATTGCCAAAGCATGTTAGAGAGAAGCAAGAATTACTAGCTCGAAGAAAAGAGGCTGAAGAAAAACAGAGAAGAGAAGAGGAGGAAAAGCTAAGGAAAGAAGAAGAGGAGCGACTAAGGCTAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAAACGTAAAAAGAAGGAAAAGGAAAAGGAAAAACTTCTGAAAAAGAAGCAAGAAGGTAAATTGTTAACTGGTAAGCAGAAGGAAGAAGCCCGGCGATTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACAGGGGGTGTGACTCTCCCCGCTGGGGACAGTGGTGCACCAACCAAGAAACCCATTTATCAGACGAAGAAGGGGAAATCAACTAGTCGAAATTATAATGGTGCTGCTGCTGTCAAGACAGACCACAGTATTGAAGCAAAGGAAACTACTGCTGATTTGGATTCAGAGGAACCAAAGAAGGTTGAAGAAGTGGAGTCGGCGCAGAAGGAGGATAAAGTTGAACTTCCGGAAGCTGTTGAAGAGGATAGAGTGGAAGAAGATGATGTTGAGGATGAATGGGACGCCAGAAGCTGGGATGATGTCAATCTGAATGGTAAGGGTGCATTTGCTGATGAAGAAGTTGACTCTGAGCCTGAAATGATTGTCAAAAAAGAGATTAAAACTGGCCTACCTGCTAAAAATGCTGGTGCTACAAGTAAAACTGTTTCGAAGCATGTCGCCGAAGAAATTGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAAGCCCGACCCACAACATTCTGCTGTGTCTTCTAAGCCGAGTGATGCAAACCTCCGATCACCAATATGCTGCATCATGGGTCATGTGGACACTGGCAAAACCAAGCTTCTGGATTGTATTCGAGGTACCAATGTTCAAGAAGGTGAGGCTGGCGGTATCACCCAACAGATTGGCGCAACATACTTTCCTGCTGAGAACATACGTGATAGAACTAAGGAATTGAAAGCTGATGCAACACTGAAAGTTCCAGGTCTACTGGTTATTGATACCCCAGGCCACGAGTCATTCAATAATCTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATCTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTAAAGAGTCACTTGAACTATTAAAAATGAGGAACACAGAATTCATTGTTGCATTGAATAAGGTTGATAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGTTGCAGCAGTCTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCGAACAGATTGTTACCCAGTTCAAGGAACAGGGGCTAAATACTGCATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCCACAAGTGCAATAAGCGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACCCAAAAGACCATGATTGAGAAACTTACATACAGTGATGAAGTGCAGTGTACAGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGACGTTGTTTTAGTTAACGGCGTCCTTCATGAAGGAGATCAAATAGTTGTACCTGGAATGCAGGGTCCAATTGTTACCTCAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCGATGGGCATCAAGATCACTGCCCAGGGACTTGAACATGCTATTGCTGGCGGAAGTTTATATGTGGTGAAGCCTGATGATGATTTAGAATATATTAAAACAGCAGCCTTAGAAGACGTGGAGTCAGTCTTGAGCAGGATTGATAGGAGTGGTGAGGGCGTTTGTGTCCAGGCATCAACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGCAGTGAATATTCCAGTTAGTTCTATAAGCATAGGCCCTGTACATAAGAAGGATGTGATGAAAGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCCACTATATTGGCATTCGATGTCAAAGTCACCCCTGAAGCCAGGGAACTTGCAGAGGAATTGGGCGTTAAAATATTTATTGCCGATATCATTTATCATCTATTTGATCAATTTAAGGCTTACATGGAAAACATTAAGGAGGAGAAAAAGAAAGAATCGGCTGATGAGGCAGTCTTCCCATGTGTTCTAAAGATCTTACCAAACTGTGTTTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATCGGAACTCCAATTTGTATTCCATCCCAAGATTTCATTGACATTGGACGCATTGCCTCCATTGAGAATAACCACAAACCAGTTGATTATGCAAAGAAAGGGCAGCAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAGGAACAGCAGAAAATGTTCGGCAGACATTTTGAGATGGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATTCTCAAATCTGATTATCGGGATGAACTAAGTAATGAAGAATGGAAGCTGGTGGTGAAGTTGAAGATTCTTTTCAGGATACAATGA 3897 0.4208 MGKKKPSARDDENPPQQGGGKSKKKSQVIDDDEYSIGTELSEEPSLPQPEEKQEKPGKKKGKKGNSKSLQAKDNGDDFDEENDDDVPEIVFAGKKKGKSKKSGSGSVFSAAAGFGLLGDEGEVDNDDDEEKSELTGNGDDDEDEPVVSFTGKKKSSKGNKKGSSSFSAVSFDEIDGEDESKNDKVEDDDDEDIGPITFTGKKKKSSKSLKKAVSFSSTDIPDEDSVSVSESAKGGEDKDEDDVSLVEFTGKKKSSKKKSGSAAAKVSNEDEFGSESVDVVESEKPSANVDNGNISKSEEVVGTSKNKKKNKKKSGRTAQEEEDLDKILAELGEAPPTAKPSAPPKQDDKVQPAPEVGSVPGASGEKEGEEEIVESAAAKKKKKKKEKEKEKKAAAAAAGSSTANETAEVEAETIEPKKNDLKSKAAADKKLPKHVREKQELLARRKEAEEKQRREEEEKLRKEEEERLRLEELERQAEEAKRKKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPAGDSGAPTKKPIYQTKKGKSTSRNYNGAAAVKTDHSIEAKETTADLDSEEPKKVEEVESAQKEDKVELPEAVEEDRVEEDDVEDEWDARSWDDVNLNGKGAFADEEVDSEPEMIVKKEIKTGLPAKNAGATSKTVSKHVAEEIEDRKQAKVVVEDKKKKPDPQHSAVSSKPSDANLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTKESLELLKMRNTEFIVALNKVDRLYGWKTCRNAPIRKAMLQQSKDVQNEFNMRLEQIVTQFKEQGLNTALYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMIEKLTYSDEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVPGMQGPIVTSIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGGSLYVVKPDDDLEYIKTAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPAVNIPVSSISIGPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFKAYMENIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQDFIDIGRIASIENNHKPVDYAKKGQQVAIKIVGSNSEEQQKMFGRHFEMDDELVSHISRRSIDILKSDYRDELSNEEWKLVVKLKILFRIQ 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi293g00007 1298 CDD aeIF5B_II 930 1035 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 364 381 - -
Vivi293g00007 1298 Coils Coil 366 398 - -
Vivi293g00007 1298 FunFam eukaryotic translation initiation factor 5B 929 1048 - -
Vivi293g00007 1298 FunFam Eukaryotic translation initiation factor 5B 1161 1298 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 286 300 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 667 694 - -
Vivi293g00007 1298 Pfam Translation-initiation factor 2 1038 1147 IPR023115 -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 314 329 - -
Vivi293g00007 1298 FunFam Eukaryotic translation initiation factor 5B 700 928 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 115 632 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 210 225 - -
Vivi293g00007 1298 PRINTS GTP-binding elongation factor signature 826 835 IPR000795 GO:0003924|GO:0005525
Vivi293g00007 1298 PRINTS GTP-binding elongation factor signature 710 723 IPR000795 GO:0003924|GO:0005525
Vivi293g00007 1298 PRINTS GTP-binding elongation factor signature 774 784 IPR000795 GO:0003924|GO:0005525
Vivi293g00007 1298 PRINTS GTP-binding elongation factor signature 790 801 IPR000795 GO:0003924|GO:0005525
Vivi293g00007 1298 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1032 1160 IPR036925 -
Vivi293g00007 1298 CDD IF2_eIF5B 709 919 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 544 559 - -
Vivi293g00007 1298 CDD IF2_aeIF5B_IV 1169 1264 - -
Vivi293g00007 1298 Gene3D - 1048 1154 IPR036925 -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 603 618 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 564 602 - -
Vivi293g00007 1298 SUPERFAMILY Translation proteins 1165 1296 IPR009000 -
Vivi293g00007 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 707 997 IPR027417 -
Vivi293g00007 1298 Gene3D Translation factors 929 1047 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 179 193 - -
Vivi293g00007 1298 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 706 922 IPR000795 GO:0003924|GO:0005525
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 229 254 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 120 144 - -
Vivi293g00007 1298 Gene3D Translation factors 1161 1298 - -
Vivi293g00007 1298 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 266 1291 IPR015760 -
Vivi293g00007 1298 Coils Coil 431 498 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 410 516 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 1 85 - -
Vivi293g00007 1298 Gene3D - 700 928 IPR027417 -
Vivi293g00007 1298 NCBIfam small GTP-binding protein domain 711 835 IPR005225 GO:0005525
Vivi293g00007 1298 Pfam Elongation factor Tu GTP binding domain 710 918 IPR000795 GO:0003924|GO:0005525
Vivi293g00007 1298 FunFam Eukaryotic translation initiation factor 5B 1048 1154 - -
Vivi293g00007 1298 MobiDBLite consensus disorder prediction 657 703 - -
Vivi293g00007 1298 Pfam Elongation factor Tu domain 2 945 1022 IPR004161 GO:0005525
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi293g00007 1 1298 Eukaryotic Initiation Factors Gene Family AT1G76810 62.509 0.0 1209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi293g00007 K03243 - gmx:100814640 1524.99