Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi292g00002 ATGGATTTGCTTGAAGGCGTTGGAGAGAGTTCATCGCCACCGCGCTCCTTCGGCGGTTACAGCCACGATATCAGAACCGACGTTTACAACCGATTGGTGGAAACCGGCCACGACGAAGCCGTATCGAATCCGGATTTTCGTGAACAGCTTGAAGCTCACTTCAATCGCTTGCCTCCAAGAATATTTCTACTAGGACAGATGGCGAAGATCAAGAAATTAACAAGAGATCTTGCAACTGAGTTTGAGCCTTGCTCAAAGCTTGAGGACCTAAATTTGGATGTTATAAAGAACTCCAAGGAAACAAAAGAAAAATTTGTTACTGACAGCTTTTCTCAGAGGCATGAAAATTCAAGTGTCCCAGTTCATGAAATAATATTTTCTGCTGTTGACAAACCAAAGCTTTTAAGTCAGCTGTCCGCTTTGCTGTCTGATATTGGGCTTAACATCCGTGAAGCACATGTATTTTCTACAACTGATGGCTACTCCCTCGATGTTTTTGTGGTAGATGGATGGCCACTAGAGGAAACCGATGGGTTGTACGCTGCTATGGAAAAAGCTGTAGCAAGGAGTGAGGGGTCATGGTCTCATTCTTCAAATTCTCATTCAGCTGTGGCAAAAGCCTTAGCAGCAGAAGGAAAATCTGGGGACTGGGAAATAGACAGGAGGTCGTTAAAGATAGGAGAAAAAATAGCATCTGGATCATGTGGAGATTTGTATCATGGAGTTTATCTTGGTGAAGATGTAGCTGTTAAGGTTTTGAAATCTGGGCAACTGAATGATGCCTTAGAAGATGAGTTTACGCAAGAAGTAGCAATTTTGAGACAGGTGCATCATAAAAATGTTGTTCGTTTCATTGGTGCATGCACAAAGTGTCCACATTTGTGCATAGTAACAGAGTATATGACTGGGGGAAGTCTGTATGATTACTTGCACAAAAATCGTAATGTCTTGGAGCTGTCTCAATTACTCAAGTTTTCAATTGATGTCTGCAAGGGAATGGAGTATTTGCATGGAAATAACATAATTCACAGGGATCTGAAGACAGCCAATTTGCTGATGGATACTCACAATGTTGTTAAAGTGGCAGATTTTGGAGTTGCTCGGTTCCTTATCCAGGGTGGAGTGATGACTGCAGAGACTGGAACTTATAGATGGATGGCACCAGAGGTCATAAACCACCAGCCTTATGATCAGAAGGCAGATGTATTCAGTTTTTCCATAGTACTATGGGAACTAGTGACAGCAAAGGTACCATATGATACCATGACTCCACTACAAGCTGCTTTGGGTGTGAGACAGGGACTGAGACCAGAACTTCCAAAGCATGGGCACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAATTCCAAGCAGTCGTCCAGCCTTCAATGAGATAAGAGTTGAACTTGAAAATCTTTTGCTAGAAGTGGAGAATAATTTAGAAGCTAATGGTGCTTAA 1467 0.4226 MDLLEGVGESSSPPRSFGGYSHDIRTDVYNRLVETGHDEAVSNPDFREQLEAHFNRLPPRIFLLGQMAKIKKLTRDLATEFEPCSKLEDLNLDVIKNSKETKEKFVTDSFSQRHENSSVPVHEIIFSAVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPLEETDGLYAAMEKAVARSEGSWSHSSNSHSAVAKALAAEGKSGDWEIDRRSLKIGEKIASGSCGDLYHGVYLGEDVAVKVLKSGQLNDALEDEFTQEVAILRQVHHKNVVRFIGACTKCPHLCIVTEYMTGGSLYDYLHKNRNVLELSQLLKFSIDVCKGMEYLHGNNIIHRDLKTANLLMDTHNVVKVADFGVARFLIQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLDLMQRCWEAIPSSRPAFNEIRVELENLLLEVENNLEANGA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi292g00002 488 SMART serkin_6 224 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi292g00002 488 PRINTS Tyrosine kinase catalytic domain signature 381 391 IPR001245 GO:0004672|GO:0006468
Vivi292g00002 488 PRINTS Tyrosine kinase catalytic domain signature 443 465 IPR001245 GO:0004672|GO:0006468
Vivi292g00002 488 PRINTS Tyrosine kinase catalytic domain signature 335 353 IPR001245 GO:0004672|GO:0006468
Vivi292g00002 488 PRINTS Tyrosine kinase catalytic domain signature 298 311 IPR001245 GO:0004672|GO:0006468
Vivi292g00002 488 PRINTS Tyrosine kinase catalytic domain signature 400 422 IPR001245 GO:0004672|GO:0006468
Vivi292g00002 488 Pfam ACT domain 122 169 IPR002912 -
Vivi292g00002 488 Pfam Protein tyrosine and serine/threonine kinase 224 471 IPR001245 GO:0004672|GO:0006468
Vivi292g00002 488 FunFam Serine/threonine-protein kinase isoform 1 214 302 - -
Vivi292g00002 488 SUPERFAMILY Protein kinase-like (PK-like) 213 477 IPR011009 -
Vivi292g00002 488 Gene3D Transferase(Phosphotransferase) domain 1 303 486 - -
Vivi292g00002 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 341 353 IPR008271 GO:0004672|GO:0006468
Vivi292g00002 488 SUPERFAMILY ACT-like 122 190 IPR045865 -
Vivi292g00002 488 ProSiteProfiles ACT domain profile. 123 195 IPR002912 -
Vivi292g00002 488 CDD STKc_MAP3K-like 230 468 - -
Vivi292g00002 488 ProSiteProfiles Protein kinase domain profile. 224 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi292g00002 488 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 188 480 - -
Vivi292g00002 488 Gene3D Phosphorylase Kinase; domain 1 211 302 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi292g00002 117 479 MAP Kinase Kinase Kinase AT2G17700 57.333 1.58e-153 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi292g00002 PK_Tyr_Ser-Thr 8.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi292g00002 - - gmx:100797987 712.605