Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi28g00006 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAATAATACTAACAACACCAACGGTAACAGTAACAGTAACGGTTTCACTTGGGGTAGTAGTAGTACTACTACGAGTAACAGTGCATGGAACAACAACACTTTCAACGTTGCCGTTGCCGTCAACCCCGGTTTAGACAACGCGGTGATGTTTCATCCGCATGCAAACGAAGGCGGTGTACGGGAGGTTCGGGGGAGCTACACGGAGGCGTTCGGTGGAGGTTTGGCTAGGGCTCATCACGTGATGCCGGATCCGCATCTCACGTGTTTGAAGTTGGGGAAGAGGCATTATTTTGAGGATGTGAGTGGTGGAGGTGGAGGCGGTGGAGGCGGTGGGGGTTTGGTGGATAAGAGAGGGAAAGGGTACTGTGGTGGTGGTGGGAAGGCGGTGGCGGGTTTGGCGGTGGGGAGTTCGGTGGCGAGGTGTCAGGTGGATGGATGCCACGTGGGATTGATGAACGCGAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTGATGGGTTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTCCATGTTGTTTCGGAGTTTGATGATTCTAAGAGAAGTTGTAGGAGAAGACTGGCAGGACACAATGAGAGAAGAAGAAAGAGTTCCCACGATTCTGTTTCAAGGAGTTCATCACAAGGTGGGTGTGCTCTCTCTCTTCTGTCATCAAGGACTGATGCATGGCTTTCTCCCGATGATCTCTCCGTAAGATGCAGTGCTGCGTTAAGCGAATTGATAGCAGAAAACCGGGCAGCGATAATGGCTAGGCAATATGTCTCCGATAGAGACTGGCATTTGCAACACCATGCAGTGGAAGACTACAAAGAGATCCAACCCGAGTCCAACTATTTCCCGCAACAGATGTTTCCGCAGACACACTAA 966 0.5021 MDFGGNMFCLNNRDQNNTNNTNGNSNSNGFTWGSSSTTTSNSAWNNNTFNVAVAVNPGLDNAVMFHPHANEGGVREVRGSYTEAFGGGLARAHHVMPDPHLTCLKLGKRHYFEDVSGGGGGGGGGGGLVDKRGKGYCGGGGKAVAGLAVGSSVARCQVDGCHVGLMNAKEYHRRHKVCEMHSKAPKVVVMGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVSRSSSQGGCALSLLSSRTDAWLSPDDLSVRCSAALSELIAENRAAIMARQYVSDRDWHLQHHAVEDYKEIQPESNYFPQQMFPQTH 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi28g00006 321 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Vivi28g00006 321 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 249 IPR044817 GO:0003677
Vivi28g00006 321 FunFam Squamosa promoter-binding-like protein 14 148 217 - -
Vivi28g00006 321 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Vivi28g00006 321 MobiDBLite consensus disorder prediction 14 37 - -
Vivi28g00006 321 Gene3D - 148 217 IPR036893 GO:0003677|GO:0005634
Vivi28g00006 321 MobiDBLite consensus disorder prediction 220 242 - -
Vivi28g00006 321 Pfam SBP domain 156 229 IPR004333 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi28g00006 103 229 SBP-box Gene Family AT1G27370 50.746 5.00e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi28g00006 SBP 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi28g00006 - - vvo:131621975 531.561