Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi28g00001 ATGATGGTAGGAGTTTCAAGTAGAACTCGTAGCAAGAATGTTCCTTCCTATGGTAGTCTTTCTCTTAGCCGATCGTCAAAGCGGATAAAGAAAGAGGAAGATGATATGAGTTTTGCTGCCTCTGGTTCTAAGAAAAGAAAGGGAAAGAACGAACCGTTTGTGTTGCCTTCAGATGCTAAAGTTATTTTTATTGATGATGATGTTAAAGAAGAAGAAGAAAGTGAAGAAAACGGTGGGTTTGTTGATGAAAAGCCGACTGTTATACATTTAGATGAATCCGGTGAAAGTGATGAAGAAGATTCAGATTGTGATGATAGTGAAGAAAATGAGTCAAGTGATGAAGATTTTAGCGTAAATGAAGTGAGTGAGGTTTCAGAGAGTGATGAAGATGGTTCATCATCATCTTGCTCTGCTTACGTGAATGAGATAAAGAGAGATAGTTCACGGAAATATCTGGAAGTGGTGGGGGAGATGGTGAGAAAGGTAATGGATGATGAAAATAGTGAGATTTCTGAGAAGAAAAAGATTTCTAAGAGGAAAAAGATTAAGAGTAGTGATGGTGAAGAAAGTGAAATTTCGAAGAAGAAAAAGATTAAGAGTAGTGATGGTGAAGAAAATGAGATTCCAAAGAAGAAAAAAATACTGAGTAGTGATGGTGAAGAAAGTGAGATTTCAAAGAAGAAAAAGATTAAGGGTAGTGATGGTGAAGAAAATGAGATTCCAAAGAAGAAAAAAATACTGAGTAGTGATGATAAATCGGAGGATGAAGATGATGGTAGTGTAGCAACAACAACTACCAGGGTCTTAGAGAAGAAGGTTGATTTTGATCCAACGGAGGGTTGTTGTTCTTTCTCTAAACTGAATGTAGCGTCGGAGAGAAAAAAGGAAAAAAATGTCTCTGATGTAAATGTGTTCAAATCCAAAGGCAAAGGTAGAGTTAAGCATAATGAAAGTTTGGATTTGGATCCTAATGAAGGAAAAGAACAGAATGTTCGAGGTGTAGGTGACGGTGAAGCAAGTGTTACGAAGATTGAAACAGAAGAGAAGGTGATCAAGAAGAAAGGAAGTGATGATAAAGATAAAGCCAGCATCCAGAATGACAAGAAAAAGGAAACAGTTGCTGCAAACAAAGGAAGAGATGATAAAGGTAAAGCCAGCATCCAAAGTGACAAGAAAAAAGAAACAGTTGCTGCAAACAAAGGTTTGAATCAGAGGCGCAAAAGCACACTTTTTATGCGGAAGGAGTTGCGTTTATTCGAACTCCTTGCAGAATTCTATTGGGGAAACAAGGATAATACAGTTAAGAATGATTCAACTCCGTTCGAGGTGAAGAATGATGATGTTAATCGTCCCGAAACACGGCCACCGTCGGCTTCTGTGGAGACACGTCCGTTGATATGGAGTCTTAAAAAGAAGGAAGTAGTGCAGAAGTCGAAGGAGGAGGAGGAGGTGGCTAAGTTATGGGATGAAATGGAGAGATCACTGAGAGAAATCGAAGCCGAATCCATGATTGGAAAATATGAAACTACTCATGAAAATTTGGGAAATCCATCCACTAGATGTGAGCATGATCTTCGTCTCGACGAGGAGATTGGCGTATACTGCAGATTATGCCGTTGGGTCGAAACTGAGATACGTTACGTCTCCGAACAAGTAGTGGATAAATTTCCCAATGAGGGTTCTAGAAAAAGAGTTGCATTTGATAATGTAAATGTCTCACATTTTGATGGATCACAGTTCAAACTTTCTGATAATTATTCAGATCAGTCCAATTTCAGCTTTCATGATCAAGGCACTGTTTGGGAGCTGATCCCTGATGTCAAGAAGACCTTGTATCCTCACCAACAAGAAGGCTTCGAATTCATCTGGAAAAACTTGGCTGGAAGCATTGAGCTTCACAAGCTAAAGAACGCAGATCCTCAACGCGAGGGTGGCTGCATTATGTCGCACGCTCCTGGAACTGGAAAGACTCGGCTGACTATAGTCTTTCTCGCGACTTATCTGAGAGTTTTCCCGAAATGCTTGCCTGTTATAGTTGCTCCAGCGAGTTTGTTGCTTACTTGGGAGGAGGAGTTCAAAAAATGGGACATTGGATTTCCATTTCATAATTTGAGCAATCTTGAGTTATCTGGTAAAGAGCATGTTGATGCCCTTAATTTGGTTAGTCGGTCTAATAGCGGGGATACAACCCGGATGGCGAAACTGATTTCGTGGAACAAAGAAAGGAGCATTCTAGGAATCAGTTACAGTTTGTACGAGAAGCTAGCCGGAGGAGGAGGATCTCATGACGAGAAAAACAAAAAACAAGAAATTATGGGAAATGTTTTGCGTGAGAAACCGGGTTTACTCGTGCTAGATGAAGGTCACACTCCGAGAAATAAGAAAAGTGGTATATGGAAGGAGTTGTCAAAGAGTCATACAAAGAAGCGAATTATTCTTTCGGGAACTCCTTTCCAGAACAATTTCTTGGAGCTGTATAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAGCACATTGCCGGATGAGCTGAAAAAGTTTTGCCAGAAGCCGGAACAGAAAAAAGCAACGAAAGAATGGAGTTGGAAACCGGATTCAGGTTCTGATGATAAGATCAAGCAGCTGAAATTGCATATGGATCCCTTAGTGCATGTTCACAAAGGAGCAATCCTTGAAAAGAAGCTTCCCGGGATAAGGAATCGTGTGCTGAGATTGAAAGCGGATAGTTTGCAGAAGCAAACTATTGAGAGCATTCAAAGTTCTCAGGGTACATTCACCTTTGAGCATAAGCTGACAATGGCATCCATTCATCCGTCACTTTTTCTCGAATGCGAGCTTTTGGAAAAAGAGGAATCTGTTCTCGACAAGGTCTTGCTAGAAAAGGTCAGATTGGATTCCTACATAGGTGTGAAAACAAAGTTTTTGGTGGAGTTTGTTAGACTCTGTGATGCTGCAAATGAGAAAGTGCTCGTGTTCAGTCAATTCATCAAACCGTTACGCTTAATTATAGAACAATTAAGCTTGGCTTGTAATTGGACAGAAGGGAAGGAAATGCTGTTCTTGGATGGAGAGGTTGATCTTAAGGGAAAACAATCCCTTATCCATAACTTCAATGGTGCAAATTGTCAAGCTAAGATTCTACTTGCATCGGTAAAAGCAAATTCCGAGGGAATCAGCTTAGTTGGAGCGTCGAGAGTTGTGCTGCTGGATGTTGTATGGAATCCGTCGGTCAAACGACAGGCTATCAGCCGAGCGTATCGGATTGGACAGAAGAGGGTTGTATACACGTACCATCTGCTCATTGACGGGACTACTGAGTGCGTGAAACATTGTAAGCAGGCGGAAAAAGACCGATTATCTGAACTTGTTTTTCAAGCTAAGAATAATGGTAATGATGAGTTGGAGAAGAGTGGTGTGAAATTTGAAGACAGTATTCTTGAGAAAATGATACAGCACAAAGAGCTCAAAGACATGTTTGTTGAATGA 3486 0.405 MMVGVSSRTRSKNVPSYGSLSLSRSSKRIKKEEDDMSFAASGSKKRKGKNEPFVLPSDAKVIFIDDDVKEEEESEENGGFVDEKPTVIHLDESGESDEEDSDCDDSEENESSDEDFSVNEVSEVSESDEDGSSSSCSAYVNEIKRDSSRKYLEVVGEMVRKVMDDENSEISEKKKISKRKKIKSSDGEESEISKKKKIKSSDGEENEIPKKKKILSSDGEESEISKKKKIKGSDGEENEIPKKKKILSSDDKSEDEDDGSVATTTTRVLEKKVDFDPTEGCCSFSKLNVASERKKEKNVSDVNVFKSKGKGRVKHNESLDLDPNEGKEQNVRGVGDGEASVTKIETEEKVIKKKGSDDKDKASIQNDKKKETVAANKGRDDKGKASIQSDKKKETVAANKGLNQRRKSTLFMRKELRLFELLAEFYWGNKDNTVKNDSTPFEVKNDDVNRPETRPPSASVETRPLIWSLKKKEVVQKSKEEEEVAKLWDEMERSLREIEAESMIGKYETTHENLGNPSTRCEHDLRLDEEIGVYCRLCRWVETEIRYVSEQVVDKFPNEGSRKRVAFDNVNVSHFDGSQFKLSDNYSDQSNFSFHDQGTVWELIPDVKKTLYPHQQEGFEFIWKNLAGSIELHKLKNADPQREGGCIMSHAPGTGKTRLTIVFLATYLRVFPKCLPVIVAPASLLLTWEEEFKKWDIGFPFHNLSNLELSGKEHVDALNLVSRSNSGDTTRMAKLISWNKERSILGISYSLYEKLAGGGGSHDEKNKKQEIMGNVLREKPGLLVLDEGHTPRNKKSGIWKELSKSHTKKRIILSGTPFQNNFLELYNTLSLVKPSFPSTLPDELKKFCQKPEQKKATKEWSWKPDSGSDDKIKQLKLHMDPLVHVHKGAILEKKLPGIRNRVLRLKADSLQKQTIESIQSSQGTFTFEHKLTMASIHPSLFLECELLEKEESVLDKVLLEKVRLDSYIGVKTKFLVEFVRLCDAANEKVLVFSQFIKPLRLIIEQLSLACNWTEGKEMLFLDGEVDLKGKQSLIHNFNGANCQAKILLASVKANSEGISLVGASRVVLLDVVWNPSVKRQAISRAYRIGQKRVVYTYHLLIDGTTECVKHCKQAEKDRLSELVFQAKNNGNDELEKSGVKFEDSILEKMIQHKELKDMFVE 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi28g00001 1161 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 637 835 IPR014001 -
Vivi28g00001 1161 Gene3D - 896 1160 IPR027417 -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 438 461 - -
Vivi28g00001 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 1137 IPR027417 -
Vivi28g00001 1161 SMART helicmild6 1004 1089 IPR001650 -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 341 400 - -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 160 252 - -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 65 140 - -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 25 53 - -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 1 24 - -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 1 53 - -
Vivi28g00001 1161 Pfam Helicase conserved C-terminal domain 982 1089 IPR001650 -
Vivi28g00001 1161 CDD SF2_C_SNF 958 1100 - -
Vivi28g00001 1161 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 181 1160 IPR044567 GO:0080188
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 93 127 - -
Vivi28g00001 1161 Pfam SNF2-related domain 625 925 IPR000330 GO:0005524|GO:0140658
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 160 278 - -
Vivi28g00001 1161 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 974 1130 IPR001650 -
Vivi28g00001 1161 SMART ultradead3 607 847 IPR014001 -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 291 332 - -
Vivi28g00001 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 854 IPR027417 -
Vivi28g00001 1161 Gene3D - 583 883 IPR038718 -
Vivi28g00001 1161 MobiDBLite consensus disorder prediction 291 401 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi28g00001 984 1119 RAD5 or RAD16-like Gene Family AT5G43530 38.971 2.27e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi28g00001 SNF2_N 5.9e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi28g00001 K10875 - gmx:100806733 824.698